PlantSME Plant secondary metabolism enzyme database

Populus tremula (populus_tremula)

Imported from atlas release summary for Populus tremula.

3319
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 927 20 BAHD (456) View species results
Alkaloid pathway 791 24 NMT (188) View species results
Phenylpropanoid pathway 711 13 POD (308) View species results
Flavonoid pathway 335 11 UFGT (164) View species results
Steroid pathway 312 13 CAS (122) View species results
Rosmarinic acid pathway 243 7 4CL (80) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2142 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 662 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
Potra000002g00005.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra000002g00005.2 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra000002g00005.3 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra000002g00005.4 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra000002g00005.5 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra000055g00223.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Potra000055g00223.2 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Potra000440g02424.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra000526g03608.3 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra000674g05224.2 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra000811g06457.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra000932g07617.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra000932g07617.2 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra001132g09938.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Potra001205g10418.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra001205g10418.2 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra001657g13605.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Potra001677g13741.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra001898g15081.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra001898g15081.2 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra001898g15081.3 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra001898g15081.4 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra001898g15082.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra001898g15082.2 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra001898g15082.3 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra002380g18122.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra002730g19859.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Potra003135g20820.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra003505g21843.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra003974g23895.3 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Potra004115g24529.1 Alkaloid NCS medium pass NCS__00004__sp_Q4QTJ2_NCS1_PAPSO
Potra004115g24529.2 Alkaloid NCS medium pass NCS__00004__sp_Q4QTJ2_NCS1_PAPSO