PlantSME Plant secondary metabolism enzyme database

Populus tremula (populus_tremula)

Imported from atlas release summary for Populus tremula.

3319
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 927 20 BAHD (456) View species results
Alkaloid pathway 791 24 NMT (188) View species results
Phenylpropanoid pathway 711 13 POD (308) View species results
Flavonoid pathway 335 11 UFGT (164) View species results
Steroid pathway 312 13 CAS (122) View species results
Rosmarinic acid pathway 243 7 4CL (80) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2142 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 662 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
Potra000178g00684.1 Alkaloid PMT low borderline
Potra000178g00684.2 Alkaloid PMT low borderline
Potra000178g00684.3 Alkaloid PMT low borderline
Potra000178g00684.4 Alkaloid PMT low borderline
Potra000408g01988.1 Alkaloid PMT medium pass
Potra000511g03374.1 Alkaloid PMT low borderline
Potra000599g04558.1 Alkaloid PMT medium pass
Potra000609g04635.1 Alkaloid PMT medium borderline
Potra000609g04635.2 Alkaloid PMT medium borderline
Potra000609g04635.3 Alkaloid PMT medium borderline
Potra000609g04635.4 Alkaloid PMT medium borderline
Potra001169g10129.1 Alkaloid PMT medium pass
Potra001320g11325.1 Alkaloid PMT medium pass
Potra001320g11325.2 Alkaloid PMT medium pass
Potra001534g12735.1 Alkaloid PMT low borderline
Potra001534g12735.2 Alkaloid PMT low borderline
Potra001534g12735.3 Alkaloid PMT low borderline
Potra001661g13636.1 Alkaloid PMT medium pass
Potra001661g13636.2 Alkaloid PMT medium pass
Potra002053g16020.1 Alkaloid PMT low borderline
Potra002433g18465.1 Alkaloid PMT low borderline
Potra002576g19378.1 Alkaloid PMT low borderline
Potra002728g19855.1 Alkaloid PMT low borderline
Potra002731g19862.1 Alkaloid PMT medium pass
Potra002731g19862.2 Alkaloid PMT medium pass
Potra002731g19862.3 Alkaloid PMT medium pass
Potra003463g21747.1 Alkaloid PMT medium pass
Potra003852g23155.1 Alkaloid PMT medium pass
Potra003920g23523.1 Alkaloid PMT medium borderline
Potra003920g23523.2 Alkaloid PMT medium borderline
Potra003920g23523.3 Alkaloid PMT medium borderline
Potra003920g23523.4 Alkaloid PMT medium borderline
Potra003920g23523.5 Alkaloid PMT medium borderline
Potra006956g25878.1 Alkaloid PMT medium borderline
Potra006956g25878.2 Alkaloid PMT medium borderline
Potra008565g34364.1 Alkaloid PMT medium pass
Potra160258g26848.1 Alkaloid PMT low borderline
Potra160258g26848.2 Alkaloid PMT low borderline
Potra160258g26848.3 Alkaloid PMT low borderline
Potra160258g26848.4 Alkaloid PMT low borderline
Potra160258g26848.5 Alkaloid PMT low borderline
Potra175570g27810.1 Alkaloid PMT low borderline
Potra181392g28153.1 Alkaloid PMT medium pass