PlantSME Plant secondary metabolism enzyme database

Populus tremula (populus_tremula)

Imported from atlas release summary for Populus tremula.

3319
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 927 20 BAHD (456) View species results
Alkaloid pathway 791 24 NMT (188) View species results
Phenylpropanoid pathway 711 13 POD (308) View species results
Flavonoid pathway 335 11 UFGT (164) View species results
Steroid pathway 312 13 CAS (122) View species results
Rosmarinic acid pathway 243 7 4CL (80) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2142 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 662 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DFR
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Gene Pathway Family Confidence Status
Potra000010g00056.1 Flavonoid DFR medium borderline
Potra000010g00056.2 Flavonoid DFR medium borderline
Potra000010g00056.4 Flavonoid DFR medium borderline
Potra000147g00516.1 Flavonoid DFR medium borderline
Potra000147g00516.2 Flavonoid DFR medium borderline
Potra000159g00571.1 Flavonoid DFR medium pass
Potra000159g00571.2 Flavonoid DFR medium pass
Potra000159g00571.3 Flavonoid DFR medium pass
Potra000413g02039.1 Flavonoid DFR medium borderline
Potra001307g11232.1 Flavonoid DFR medium pass
Potra001307g11232.2 Flavonoid DFR medium pass
Potra001586g13131.1 Flavonoid DFR medium borderline
Potra001586g13131.2 Flavonoid DFR medium borderline
Potra001586g13131.3 Flavonoid DFR medium borderline
Potra001586g13131.4 Flavonoid DFR medium borderline
Potra001653g13562.1 Flavonoid DFR low borderline
Potra001653g13562.2 Flavonoid DFR low borderline
Potra001653g13562.3 Flavonoid DFR low borderline
Potra001653g13562.4 Flavonoid DFR low borderline
Potra001791g14538.1 Flavonoid DFR medium borderline
Potra001917g15214.1 Flavonoid DFR low borderline
Potra001917g15223.1 Flavonoid DFR medium borderline
Potra001917g15223.2 Flavonoid DFR medium borderline
Potra001917g15224.1 Flavonoid DFR medium borderline
Potra001917g15224.2 Flavonoid DFR medium borderline
Potra003721g35625.1 Flavonoid DFR medium borderline
Potra008680g26209.1 Flavonoid DFR low borderline
Potra008680g26209.2 Flavonoid DFR low borderline
Potra010400g26588.1 Flavonoid DFR low borderline
Potra158457g34793.1 Flavonoid DFR medium borderline
Potra190065g28743.1 Flavonoid DFR medium borderline
Potra194092g28921.4 Flavonoid DFR medium borderline
Potra200486g29516.3 Flavonoid DFR medium borderline