PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
Reset
Gene Pathway Family Confidence Status
Rsat05G0042210 Alkaloid 7DLGT low borderline
Rsat05G0042340 Alkaloid 7DLGT low borderline
Rsat05G0046490 Alkaloid 7DLGT low borderline
Rsat05G0050490 Alkaloid 7DLGT low borderline
Rsat05G0050680 Alkaloid 7DLGT high pass
Rsat05G0057100 Alkaloid 7DLGT medium pass
Rsat06G0003050 Alkaloid 7DLGT low borderline
Rsat06G0003070 Alkaloid 7DLGT low borderline
Rsat06G0016730 Alkaloid 7DLGT medium pass
Rsat06G0016750 Alkaloid 7DLGT medium pass
Rsat06G0016760 Alkaloid 7DLGT medium pass
Rsat06G0016770 Alkaloid 7DLGT low borderline
Rsat06G0026830 Alkaloid 7DLGT medium pass
Rsat06G0026840 Alkaloid 7DLGT medium pass
Rsat06G0027990 Alkaloid 7DLGT medium pass
Rsat07G0005450 Alkaloid 7DLGT high pass
Rsat07G0011990 Alkaloid 7DLGT medium pass
Rsat07G0019770 Alkaloid 7DLGT high pass
Rsat07G0022250 Alkaloid 7DLGT high pass
Rsat07G0022260 Alkaloid 7DLGT high pass
Rsat07G0022270 Alkaloid 7DLGT high pass
Rsat07G0022280 Alkaloid 7DLGT high pass
Rsat07G0023630 Alkaloid 7DLGT medium pass
Rsat08G0008250 Alkaloid 7DLGT low borderline
Rsat08G0010850 Alkaloid 7DLGT medium pass
Rsat08G0014460 Alkaloid 7DLGT low borderline
Rsat08G0014470 Alkaloid 7DLGT low borderline
Rsat08G0024110 Alkaloid 7DLGT medium pass
Rsat08G0029100 Alkaloid 7DLGT low borderline
Rsat08G0031360 Alkaloid 7DLGT medium pass
Rsat09G0000430 Alkaloid 7DLGT low borderline
Rsat09G0016200 Alkaloid 7DLGT high pass
Rsat09G0019430 Alkaloid 7DLGT high pass
Rsat09G0024610 Alkaloid 7DLGT low borderline
Rsat09G0028440 Alkaloid 7DLGT low borderline
Rsat09G0028960 Alkaloid 7DLGT low borderline
Rsat09G0034040 Alkaloid 7DLGT medium pass
Rsat09G0042230 Alkaloid 7DLGT low borderline
RsatScaffold2600007330 Alkaloid 7DLGT low borderline
RsatScaffold29770008740 Alkaloid 7DLGT medium pass
RsatScaffold3440010740 Alkaloid 7DLGT low borderline
RsatScaffold8890019400 Alkaloid 7DLGT medium pass
RsatScaffold9410019730 Alkaloid 7DLGT low borderline