PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C3'H/CYP98A
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Gene Pathway Family Confidence Status
Rsat01G0053000 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0053020 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0053250 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0055130 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0058820 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0058830 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0058850 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0059400 Phenylpropanoid C3'H/CYP98A low borderline
Rsat02G0000720 Phenylpropanoid C3'H/CYP98A low borderline
Rsat02G0000730 Phenylpropanoid C3'H/CYP98A low borderline
Rsat02G0001090 Phenylpropanoid C3'H/CYP98A low borderline
Rsat02G0001670 Phenylpropanoid C3'H/CYP98A high pass
Rsat02G0001680 Phenylpropanoid C3'H/CYP98A high pass
Rsat02G0001700 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat02G0001720 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat02G0001740 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat02G0001750 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat02G0002470 Phenylpropanoid C3'H/CYP98A low borderline
Rsat02G0002560 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat02G0006130 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat02G0006140 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat02G0013010 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat02G0015000 Phenylpropanoid C3'H/CYP98A low borderline
Rsat02G0015590 Phenylpropanoid C3'H/CYP98A low borderline
Rsat02G0018170 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat02G0018510 Phenylpropanoid C3'H/CYP98A low borderline
Rsat02G0021050 Phenylpropanoid C3'H/CYP98A low borderline
Rsat02G0024260 Phenylpropanoid C3'H/CYP98A low borderline
Rsat02G0024270 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat02G0024650 Phenylpropanoid C3'H/CYP98A low borderline
Rsat02G0024750 Phenylpropanoid C3'H/CYP98A low borderline
Rsat02G0024800 Phenylpropanoid C3'H/CYP98A low borderline
Rsat02G0026670 Phenylpropanoid C3'H/CYP98A low borderline
Rsat02G0029480 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat02G0029510 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat02G0029520 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat02G0035010 Phenylpropanoid C3'H/CYP98A low borderline
Rsat02G0036210 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat02G0036220 Phenylpropanoid C3'H/CYP98A medium pass
Rsat02G0036310 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat02G0036670 Phenylpropanoid C3'H/CYP98A low borderline
Rsat02G0041640 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat02G0042540 Phenylpropanoid C3'H/CYP98A low borderline
Rsat02G0045400 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat02G0046770 Phenylpropanoid C3'H/CYP98A low borderline
Rsat03G0001460 Phenylpropanoid C3'H/CYP98A low borderline
Rsat03G0001730 Phenylpropanoid C3'H/CYP98A low borderline
Rsat03G0010420 Phenylpropanoid C3'H/CYP98A low borderline
Rsat03G0011260 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat03G0011270 Phenylpropanoid C3'H/CYP98A low borderline