PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C3'H/CYP98A
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Gene Pathway Family Confidence Status
Rsat03G0011400 Phenylpropanoid C3'H/CYP98A low borderline
Rsat03G0013810 Phenylpropanoid C3'H/CYP98A low borderline
Rsat03G0015180 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat03G0015310 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat03G0016550 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat03G0018640 Phenylpropanoid C3'H/CYP98A low borderline
Rsat03G0023790 Phenylpropanoid C3'H/CYP98A low borderline
Rsat03G0023800 Phenylpropanoid C3'H/CYP98A low borderline
Rsat03G0030090 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat03G0030110 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0000420 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0000610 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0000620 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0000630 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0000640 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0000650 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0000890 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0001200 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0001210 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0001230 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0001760 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0001820 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0010590 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0011320 Phenylpropanoid C3'H/CYP98A high pass
Rsat04G0012790 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0012830 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0012870 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0015200 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0016590 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0016690 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0016700 Phenylpropanoid C3'H/CYP98A medium pass
Rsat04G0016720 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0017110 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0019970 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0021200 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0021360 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0021370 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0022280 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0022290 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0022330 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0022350 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0022370 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0022380 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0022390 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0022690 Phenylpropanoid C3'H/CYP98A high pass
Rsat04G0027420 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0027480 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0034490 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0034860 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0037740 Phenylpropanoid C3'H/CYP98A low borderline