PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C3'H/CYP98A
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Gene Pathway Family Confidence Status
Rsat04G0039110 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0039360 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0039670 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0040140 Phenylpropanoid C3'H/CYP98A low borderline
Rsat04G0043870 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0050910 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0051760 Phenylpropanoid C3'H/CYP98A medium pass
Rsat04G0051970 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0053930 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0053940 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0053950 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0053960 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0053970 Phenylpropanoid C3'H/CYP98A medium pass
Rsat04G0054110 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0055530 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0055930 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0057200 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0060710 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat04G0061160 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat05G0000950 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0003520 Phenylpropanoid C3'H/CYP98A medium pass
Rsat05G0005770 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0005780 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0005790 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0007570 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0007860 Phenylpropanoid C3'H/CYP98A medium pass
Rsat05G0007900 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat05G0007910 Phenylpropanoid C3'H/CYP98A medium pass
Rsat05G0011580 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0013750 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat05G0013890 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat05G0016010 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0016110 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat05G0021020 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat05G0023580 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0027170 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat05G0033150 Phenylpropanoid C3'H/CYP98A medium pass
Rsat05G0033340 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0043560 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat05G0043600 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat05G0044300 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0047890 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0047900 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0047910 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0047920 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0047930 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0047940 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0047950 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0048670 Phenylpropanoid C3'H/CYP98A low borderline
Rsat05G0051280 Phenylpropanoid C3'H/CYP98A low borderline