PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
Rsat01G0012110 Flavonoid C4H medium borderline
Rsat01G0015240 Flavonoid C4H low borderline
Rsat02G0018510 Flavonoid C4H low borderline
Rsat03G0015170 Flavonoid C4H medium borderline
Rsat03G0015180 Flavonoid C4H medium borderline
Rsat04G0012870 Flavonoid C4H low borderline
Rsat04G0043870 Flavonoid C4H medium borderline
Rsat04G0058060 Flavonoid C4H medium borderline
Rsat05G0013240 Flavonoid C4H low borderline
Rsat09G0002620 Flavonoid C4H low borderline
Rsat01G0001000 Rosmarinic Acid C4H low borderline
Rsat01G0001940 Rosmarinic Acid C4H medium pass
Rsat01G0001960 Rosmarinic Acid C4H low borderline
Rsat01G0009190 Rosmarinic Acid C4H low borderline
Rsat01G0009390 Rosmarinic Acid C4H low borderline
Rsat01G0010780 Rosmarinic Acid C4H low borderline
Rsat01G0012110 Rosmarinic Acid C4H medium pass
Rsat01G0012950 Rosmarinic Acid C4H low borderline
Rsat01G0014260 Rosmarinic Acid C4H low borderline
Rsat01G0015220 Rosmarinic Acid C4H medium pass
Rsat01G0015230 Rosmarinic Acid C4H medium pass
Rsat01G0015240 Rosmarinic Acid C4H low borderline
Rsat01G0017320 Rosmarinic Acid C4H low borderline
Rsat01G0017690 Rosmarinic Acid C4H low borderline
Rsat01G0017700 Rosmarinic Acid C4H low borderline
Rsat01G0018130 Rosmarinic Acid C4H low borderline
Rsat01G0018170 Rosmarinic Acid C4H medium pass
Rsat01G0021390 Rosmarinic Acid C4H low borderline
Rsat01G0022220 Rosmarinic Acid C4H low borderline
Rsat01G0023030 Rosmarinic Acid C4H low borderline
Rsat01G0026670 Rosmarinic Acid C4H low borderline
Rsat01G0026680 Rosmarinic Acid C4H low borderline
Rsat01G0026710 Rosmarinic Acid C4H low borderline
Rsat01G0026720 Rosmarinic Acid C4H low borderline
Rsat01G0026740 Rosmarinic Acid C4H low borderline
Rsat01G0039090 Rosmarinic Acid C4H low borderline
Rsat01G0042580 Rosmarinic Acid C4H low borderline
Rsat01G0042800 Rosmarinic Acid C4H low borderline
Rsat01G0042810 Rosmarinic Acid C4H medium pass
Rsat01G0042840 Rosmarinic Acid C4H low borderline
Rsat01G0042850 Rosmarinic Acid C4H low borderline
Rsat01G0042860 Rosmarinic Acid C4H medium pass
Rsat01G0042870 Rosmarinic Acid C4H low borderline
Rsat01G0042880 Rosmarinic Acid C4H medium pass
Rsat01G0042890 Rosmarinic Acid C4H low borderline
Rsat01G0042900 Rosmarinic Acid C4H low borderline
Rsat01G0042910 Rosmarinic Acid C4H low borderline
Rsat01G0042920 Rosmarinic Acid C4H low borderline
Rsat01G0044010 Rosmarinic Acid C4H medium pass
Rsat01G0045160 Rosmarinic Acid C4H medium pass