PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Gene Pathway Family Confidence Status
Rsat01G0000730 Steroid DWF4/CYP90B1 low borderline
Rsat01G0001960 Steroid DWF4/CYP90B1 low borderline
Rsat01G0015220 Steroid DWF4/CYP90B1 low borderline
Rsat01G0015230 Steroid DWF4/CYP90B1 low borderline
Rsat01G0016760 Steroid DWF4/CYP90B1 low borderline
Rsat01G0017320 Steroid DWF4/CYP90B1 low borderline
Rsat01G0017700 Steroid DWF4/CYP90B1 low borderline
Rsat01G0018130 Steroid DWF4/CYP90B1 low borderline
Rsat01G0021390 Steroid DWF4/CYP90B1 low borderline
Rsat01G0026670 Steroid DWF4/CYP90B1 low borderline
Rsat01G0026710 Steroid DWF4/CYP90B1 medium borderline
Rsat01G0026720 Steroid DWF4/CYP90B1 low borderline
Rsat01G0026740 Steroid DWF4/CYP90B1 low borderline
Rsat01G0026930 Steroid DWF4/CYP90B1 medium borderline
Rsat01G0042850 Steroid DWF4/CYP90B1 low borderline
Rsat01G0042860 Steroid DWF4/CYP90B1 low borderline
Rsat01G0042870 Steroid DWF4/CYP90B1 low borderline
Rsat01G0042880 Steroid DWF4/CYP90B1 low borderline
Rsat01G0042890 Steroid DWF4/CYP90B1 low borderline
Rsat01G0042900 Steroid DWF4/CYP90B1 low borderline
Rsat01G0044010 Steroid DWF4/CYP90B1 low borderline
Rsat01G0044620 Steroid DWF4/CYP90B1 medium borderline
Rsat01G0046580 Steroid DWF4/CYP90B1 low borderline
Rsat01G0046970 Steroid DWF4/CYP90B1 low borderline
Rsat01G0047020 Steroid DWF4/CYP90B1 low borderline
Rsat01G0047710 Steroid DWF4/CYP90B1 low borderline
Rsat01G0048950 Steroid DWF4/CYP90B1 low borderline
Rsat01G0053250 Steroid DWF4/CYP90B1 low borderline
Rsat01G0058830 Steroid DWF4/CYP90B1 low borderline
Rsat01G0058840 Steroid DWF4/CYP90B1 low borderline
Rsat01G0058850 Steroid DWF4/CYP90B1 low borderline
Rsat02G0000720 Steroid DWF4/CYP90B1 low borderline
Rsat02G0000730 Steroid DWF4/CYP90B1 low borderline
Rsat02G0001090 Steroid DWF4/CYP90B1 low borderline
Rsat02G0001670 Steroid DWF4/CYP90B1 low borderline
Rsat02G0001680 Steroid DWF4/CYP90B1 low borderline
Rsat02G0001720 Steroid DWF4/CYP90B1 low borderline
Rsat02G0001740 Steroid DWF4/CYP90B1 low borderline
Rsat02G0001750 Steroid DWF4/CYP90B1 low borderline
Rsat02G0006140 Steroid DWF4/CYP90B1 low borderline
Rsat02G0018190 Steroid DWF4/CYP90B1 low borderline
Rsat02G0021050 Steroid DWF4/CYP90B1 medium borderline
Rsat02G0024800 Steroid DWF4/CYP90B1 medium borderline
Rsat02G0026670 Steroid DWF4/CYP90B1 low borderline
Rsat02G0029480 Steroid DWF4/CYP90B1 low borderline
Rsat02G0029510 Steroid DWF4/CYP90B1 low borderline
Rsat02G0035010 Steroid DWF4/CYP90B1 medium borderline
Rsat02G0036210 Steroid DWF4/CYP90B1 low borderline
Rsat02G0036670 Steroid DWF4/CYP90B1 low borderline
Rsat02G0042540 Steroid DWF4/CYP90B1 low borderline