PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Gene Pathway Family Confidence Status
Rsat02G0045400 Steroid DWF4/CYP90B1 low borderline
Rsat03G0001460 Steroid DWF4/CYP90B1 medium borderline
Rsat03G0001730 Steroid DWF4/CYP90B1 medium borderline
Rsat03G0011260 Steroid DWF4/CYP90B1 low borderline
Rsat03G0013810 Steroid DWF4/CYP90B1 low borderline
Rsat03G0023790 Steroid DWF4/CYP90B1 low borderline
Rsat04G0000650 Steroid DWF4/CYP90B1 low borderline
Rsat04G0000890 Steroid DWF4/CYP90B1 low borderline
Rsat04G0001200 Steroid DWF4/CYP90B1 low borderline
Rsat04G0001210 Steroid DWF4/CYP90B1 low borderline
Rsat04G0011320 Steroid DWF4/CYP90B1 low borderline
Rsat04G0012790 Steroid DWF4/CYP90B1 low borderline
Rsat04G0012870 Steroid DWF4/CYP90B1 medium borderline
Rsat04G0015200 Steroid DWF4/CYP90B1 low borderline
Rsat04G0016710 Steroid DWF4/CYP90B1 low borderline
Rsat04G0019970 Steroid DWF4/CYP90B1 medium borderline
Rsat04G0022280 Steroid DWF4/CYP90B1 low borderline
Rsat04G0022290 Steroid DWF4/CYP90B1 low borderline
Rsat04G0022330 Steroid DWF4/CYP90B1 low borderline
Rsat04G0022390 Steroid DWF4/CYP90B1 low borderline
Rsat04G0027480 Steroid DWF4/CYP90B1 low borderline
Rsat04G0034490 Steroid DWF4/CYP90B1 low borderline
Rsat04G0037740 Steroid DWF4/CYP90B1 medium borderline
Rsat04G0039110 Steroid DWF4/CYP90B1 medium borderline
Rsat04G0039360 Steroid DWF4/CYP90B1 low borderline
Rsat04G0053950 Steroid DWF4/CYP90B1 low borderline
Rsat04G0053960 Steroid DWF4/CYP90B1 medium borderline
Rsat04G0054110 Steroid DWF4/CYP90B1 low borderline
Rsat04G0057200 Steroid DWF4/CYP90B1 low borderline
Rsat04G0061140 Steroid DWF4/CYP90B1 low borderline
Rsat05G0005770 Steroid DWF4/CYP90B1 low borderline
Rsat05G0005780 Steroid DWF4/CYP90B1 low borderline
Rsat05G0005790 Steroid DWF4/CYP90B1 low borderline
Rsat05G0013750 Steroid DWF4/CYP90B1 low borderline
Rsat05G0027170 Steroid DWF4/CYP90B1 low borderline
Rsat05G0043550 Steroid DWF4/CYP90B1 low borderline
Rsat05G0047890 Steroid DWF4/CYP90B1 low borderline
Rsat05G0047900 Steroid DWF4/CYP90B1 low borderline
Rsat05G0047910 Steroid DWF4/CYP90B1 low borderline
Rsat05G0047920 Steroid DWF4/CYP90B1 low borderline
Rsat05G0047940 Steroid DWF4/CYP90B1 low borderline
Rsat05G0047950 Steroid DWF4/CYP90B1 low borderline
Rsat05G0051280 Steroid DWF4/CYP90B1 medium borderline
Rsat06G0001510 Steroid DWF4/CYP90B1 low borderline
Rsat06G0004440 Steroid DWF4/CYP90B1 low borderline
Rsat06G0004510 Steroid DWF4/CYP90B1 low borderline
Rsat06G0004520 Steroid DWF4/CYP90B1 low borderline
Rsat06G0009940 Steroid DWF4/CYP90B1 low borderline
Rsat06G0023700 Steroid DWF4/CYP90B1 low borderline
Rsat06G0031580 Steroid DWF4/CYP90B1 low borderline