PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Gene Pathway Family Confidence Status
Rsat06G0031610 Steroid DWF4/CYP90B1 low borderline
Rsat07G0001050 Steroid DWF4/CYP90B1 low borderline
Rsat07G0005730 Steroid DWF4/CYP90B1 low borderline
Rsat07G0023780 Steroid DWF4/CYP90B1 low borderline
Rsat07G0025360 Steroid DWF4/CYP90B1 low borderline
Rsat07G0025370 Steroid DWF4/CYP90B1 low borderline
Rsat07G0027190 Steroid DWF4/CYP90B1 medium borderline
Rsat07G0030810 Steroid DWF4/CYP90B1 medium borderline
Rsat08G0008010 Steroid DWF4/CYP90B1 low borderline
Rsat08G0008180 Steroid DWF4/CYP90B1 low borderline
Rsat08G0010650 Steroid DWF4/CYP90B1 low borderline
Rsat08G0019190 Steroid DWF4/CYP90B1 low borderline
Rsat08G0019210 Steroid DWF4/CYP90B1 low borderline
Rsat08G0019650 Steroid DWF4/CYP90B1 low borderline
Rsat08G0019980 Steroid DWF4/CYP90B1 low borderline
Rsat08G0019990 Steroid DWF4/CYP90B1 low borderline
Rsat08G0027770 Steroid DWF4/CYP90B1 low borderline
Rsat08G0027780 Steroid DWF4/CYP90B1 low borderline
Rsat08G0027790 Steroid DWF4/CYP90B1 low borderline
Rsat08G0027800 Steroid DWF4/CYP90B1 low borderline
Rsat09G0003570 Steroid DWF4/CYP90B1 low borderline
Rsat09G0003600 Steroid DWF4/CYP90B1 low borderline
Rsat09G0008100 Steroid DWF4/CYP90B1 low borderline
Rsat09G0008110 Steroid DWF4/CYP90B1 low borderline
Rsat09G0008140 Steroid DWF4/CYP90B1 low borderline
Rsat09G0009070 Steroid DWF4/CYP90B1 medium borderline
Rsat09G0011150 Steroid DWF4/CYP90B1 low borderline
Rsat09G0015720 Steroid DWF4/CYP90B1 low borderline
Rsat09G0016820 Steroid DWF4/CYP90B1 low borderline
Rsat09G0025380 Steroid DWF4/CYP90B1 medium borderline
Rsat09G0027080 Steroid DWF4/CYP90B1 low borderline
Rsat09G0032320 Steroid DWF4/CYP90B1 low borderline
Rsat09G0038210 Steroid DWF4/CYP90B1 low borderline
RsatScaffold16820003570 Steroid DWF4/CYP90B1 low borderline
RsatScaffold24290006070 Steroid DWF4/CYP90B1 medium borderline
RsatScaffold2600007120 Steroid DWF4/CYP90B1 low borderline
RsatScaffold29490008690 Steroid DWF4/CYP90B1 low borderline
RsatScaffold5350015420 Steroid DWF4/CYP90B1 low borderline