PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Rsat01G0002430 Flavonoid F3H medium borderline
Rsat01G0011910 Flavonoid F3H medium borderline
Rsat01G0011930 Flavonoid F3H medium borderline
Rsat01G0015580 Flavonoid F3H medium borderline
Rsat01G0021310 Flavonoid F3H medium borderline
Rsat01G0022730 Flavonoid F3H low borderline
Rsat01G0023570 Flavonoid F3H medium borderline
Rsat01G0025140 Flavonoid F3H medium borderline
Rsat01G0026130 Flavonoid F3H low borderline
Rsat01G0040370 Flavonoid F3H low borderline
Rsat01G0047220 Flavonoid F3H medium borderline
Rsat01G0049090 Flavonoid F3H medium borderline
Rsat01G0052020 Flavonoid F3H low borderline
Rsat01G0054410 Flavonoid F3H medium borderline
Rsat01G0058280 Flavonoid F3H low borderline
Rsat01G0058290 Flavonoid F3H low borderline
Rsat01G0059500 Flavonoid F3H medium borderline
Rsat01G0059930 Flavonoid F3H medium borderline
Rsat01G0060870 Flavonoid F3H medium borderline
Rsat02G0010610 Flavonoid F3H medium borderline
Rsat02G0010670 Flavonoid F3H medium borderline
Rsat02G0012840 Flavonoid F3H medium borderline
Rsat02G0017460 Flavonoid F3H low borderline
Rsat02G0017840 Flavonoid F3H medium borderline
Rsat02G0021980 Flavonoid F3H medium pass
Rsat02G0021990 Flavonoid F3H medium borderline
Rsat02G0024070 Flavonoid F3H medium borderline
Rsat02G0024180 Flavonoid F3H medium borderline
Rsat02G0024670 Flavonoid F3H medium borderline
Rsat02G0035200 Flavonoid F3H medium borderline
Rsat02G0036030 Flavonoid F3H low borderline
Rsat02G0038910 Flavonoid F3H low borderline
Rsat02G0040570 Flavonoid F3H low borderline
Rsat02G0040820 Flavonoid F3H medium borderline
Rsat02G0050070 Flavonoid F3H medium borderline
Rsat02G0051770 Flavonoid F3H medium borderline
Rsat02G0051780 Flavonoid F3H medium borderline
Rsat02G0051790 Flavonoid F3H low borderline
Rsat03G0002480 Flavonoid F3H medium borderline
Rsat03G0008470 Flavonoid F3H medium borderline
Rsat03G0010010 Flavonoid F3H medium borderline
Rsat03G0010020 Flavonoid F3H medium borderline
Rsat03G0010030 Flavonoid F3H medium borderline
Rsat03G0010040 Flavonoid F3H medium borderline
Rsat03G0010050 Flavonoid F3H medium borderline
Rsat03G0019510 Flavonoid F3H medium borderline
Rsat03G0032320 Flavonoid F3H low borderline
Rsat03G0032340 Flavonoid F3H low borderline
Rsat03G0033100 Flavonoid F3H medium borderline
Rsat03G0033120 Flavonoid F3H medium borderline