PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Rsat04G0007410 Flavonoid F3H medium borderline
Rsat04G0007530 Flavonoid F3H medium borderline
Rsat04G0008740 Flavonoid F3H low borderline
Rsat04G0009960 Flavonoid F3H medium borderline
Rsat04G0013500 Flavonoid F3H medium borderline
Rsat04G0016210 Flavonoid F3H medium borderline
Rsat04G0025030 Flavonoid F3H low borderline
Rsat04G0029040 Flavonoid F3H medium borderline
Rsat04G0044110 Flavonoid F3H medium borderline
Rsat04G0044120 Flavonoid F3H medium borderline
Rsat04G0048150 Flavonoid F3H medium borderline
Rsat04G0049170 Flavonoid F3H medium borderline
Rsat04G0053530 Flavonoid F3H medium borderline
Rsat04G0060020 Flavonoid F3H medium borderline
Rsat05G0004960 Flavonoid F3H medium borderline
Rsat05G0005310 Flavonoid F3H medium borderline
Rsat05G0007420 Flavonoid F3H medium borderline
Rsat05G0007430 Flavonoid F3H medium borderline
Rsat05G0010630 Flavonoid F3H medium borderline
Rsat05G0011700 Flavonoid F3H medium borderline
Rsat05G0011710 Flavonoid F3H medium borderline
Rsat05G0011720 Flavonoid F3H medium borderline
Rsat05G0025120 Flavonoid F3H medium borderline
Rsat05G0030790 Flavonoid F3H medium borderline
Rsat05G0030800 Flavonoid F3H medium borderline
Rsat05G0033850 Flavonoid F3H low borderline
Rsat05G0042400 Flavonoid F3H medium borderline
Rsat05G0044510 Flavonoid F3H low borderline
Rsat05G0047150 Flavonoid F3H low borderline
Rsat05G0048760 Flavonoid F3H medium borderline
Rsat05G0050820 Flavonoid F3H medium borderline
Rsat06G0001630 Flavonoid F3H low borderline
Rsat06G0001660 Flavonoid F3H low borderline
Rsat06G0001670 Flavonoid F3H low borderline
Rsat06G0001680 Flavonoid F3H low borderline
Rsat06G0020740 Flavonoid F3H medium borderline
Rsat06G0021680 Flavonoid F3H medium borderline
Rsat06G0022970 Flavonoid F3H low borderline
Rsat06G0022980 Flavonoid F3H low borderline
Rsat06G0025100 Flavonoid F3H medium borderline
Rsat06G0025810 Flavonoid F3H medium borderline
Rsat06G0026360 Flavonoid F3H medium borderline
Rsat06G0027110 Flavonoid F3H medium borderline
Rsat06G0027550 Flavonoid F3H medium borderline
Rsat06G0027560 Flavonoid F3H medium borderline
Rsat06G0032200 Flavonoid F3H medium borderline
Rsat07G0010410 Flavonoid F3H medium borderline
Rsat07G0021060 Flavonoid F3H medium borderline
Rsat07G0023470 Flavonoid F3H low borderline
Rsat07G0024280 Flavonoid F3H medium borderline