PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Rsat08G0013360 Flavonoid F3H medium borderline
Rsat08G0013510 Flavonoid F3H medium borderline
Rsat08G0017810 Flavonoid F3H medium borderline
Rsat08G0017840 Flavonoid F3H medium borderline
Rsat08G0027450 Flavonoid F3H low borderline
Rsat08G0027460 Flavonoid F3H low borderline
Rsat08G0031900 Flavonoid F3H medium borderline
Rsat08G0031910 Flavonoid F3H medium borderline
Rsat08G0032620 Flavonoid F3H low borderline
Rsat09G0001670 Flavonoid F3H medium borderline
Rsat09G0001680 Flavonoid F3H medium borderline
Rsat09G0004800 Flavonoid F3H medium borderline
Rsat09G0006750 Flavonoid F3H low borderline
Rsat09G0012670 Flavonoid F3H medium borderline
Rsat09G0012930 Flavonoid F3H medium borderline
Rsat09G0018080 Flavonoid F3H medium pass
Rsat09G0020740 Flavonoid F3H low borderline
Rsat09G0027810 Flavonoid F3H medium borderline
Rsat09G0033310 Flavonoid F3H low borderline
Rsat09G0041780 Flavonoid F3H medium borderline
RsatScaffold17550003870 Flavonoid F3H medium borderline
RsatScaffold24430006120 Flavonoid F3H medium borderline
RsatScaffold28720008470 Flavonoid F3H low borderline
RsatScaffold31680009450 Flavonoid F3H medium borderline
RsatScaffold3570011290 Flavonoid F3H low borderline