PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3'H/CYP75B
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Gene Pathway Family Confidence Status
Rsat04G0051750 Flavonoid F3'H/CYP75B medium borderline
Rsat04G0053930 Flavonoid F3'H/CYP75B medium borderline
Rsat04G0053970 Flavonoid F3'H/CYP75B medium borderline
Rsat04G0055530 Flavonoid F3'H/CYP75B medium pass
Rsat04G0057200 Flavonoid F3'H/CYP75B medium borderline
Rsat04G0061150 Flavonoid F3'H/CYP75B low borderline
Rsat04G0061170 Flavonoid F3'H/CYP75B medium borderline
Rsat05G0013890 Flavonoid F3'H/CYP75B medium borderline
Rsat05G0016110 Flavonoid F3'H/CYP75B medium borderline
Rsat05G0021020 Flavonoid F3'H/CYP75B medium borderline
Rsat05G0033150 Flavonoid F3'H/CYP75B medium borderline
Rsat05G0047890 Flavonoid F3'H/CYP75B low borderline
Rsat05G0047920 Flavonoid F3'H/CYP75B low borderline
Rsat05G0051280 Flavonoid F3'H/CYP75B medium borderline
Rsat06G0004440 Flavonoid F3'H/CYP75B low borderline
Rsat06G0004510 Flavonoid F3'H/CYP75B low borderline
Rsat06G0004520 Flavonoid F3'H/CYP75B low borderline
Rsat06G0013980 Flavonoid F3'H/CYP75B low borderline
Rsat06G0021180 Flavonoid F3'H/CYP75B medium borderline
Rsat06G0023260 Flavonoid F3'H/CYP75B medium borderline
Rsat06G0023950 Flavonoid F3'H/CYP75B medium borderline
Rsat06G0031600 Flavonoid F3'H/CYP75B medium borderline
Rsat06G0031610 Flavonoid F3'H/CYP75B medium borderline
Rsat07G0000700 Flavonoid F3'H/CYP75B medium borderline
Rsat07G0001050 Flavonoid F3'H/CYP75B medium borderline
Rsat07G0002340 Flavonoid F3'H/CYP75B low borderline
Rsat07G0005040 Flavonoid F3'H/CYP75B medium borderline
Rsat07G0018460 Flavonoid F3'H/CYP75B low borderline
Rsat07G0019080 Flavonoid F3'H/CYP75B medium borderline
Rsat07G0022310 Flavonoid F3'H/CYP75B medium borderline
Rsat07G0023770 Flavonoid F3'H/CYP75B medium borderline
Rsat07G0023780 Flavonoid F3'H/CYP75B medium borderline
Rsat07G0024860 Flavonoid F3'H/CYP75B medium borderline
Rsat07G0031080 Flavonoid F3'H/CYP75B medium borderline
Rsat08G0006290 Flavonoid F3'H/CYP75B medium borderline
Rsat08G0013210 Flavonoid F3'H/CYP75B medium borderline
Rsat08G0019180 Flavonoid F3'H/CYP75B medium borderline
Rsat08G0019650 Flavonoid F3'H/CYP75B medium borderline
Rsat08G0019990 Flavonoid F3'H/CYP75B low borderline
Rsat08G0020000 Flavonoid F3'H/CYP75B low borderline
Rsat08G0027760 Flavonoid F3'H/CYP75B low borderline
Rsat08G0027780 Flavonoid F3'H/CYP75B medium borderline
Rsat08G0027800 Flavonoid F3'H/CYP75B medium borderline
Rsat09G0002610 Flavonoid F3'H/CYP75B medium borderline
Rsat09G0003570 Flavonoid F3'H/CYP75B low borderline
Rsat09G0008100 Flavonoid F3'H/CYP75B medium borderline
Rsat09G0022810 Flavonoid F3'H/CYP75B medium borderline
Rsat09G0035160 Flavonoid F3'H/CYP75B medium borderline
RsatScaffold24510006150 Flavonoid F3'H/CYP75B medium borderline
RsatScaffold29490008690 Flavonoid F3'H/CYP75B medium borderline