PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Gene Pathway Family Confidence Status
Rsat02G0041640 Flavonoid IFS medium borderline
Rsat02G0045400 Flavonoid IFS medium borderline
Rsat02G0046770 Flavonoid IFS low borderline
Rsat03G0010420 Flavonoid IFS low borderline
Rsat03G0011270 Flavonoid IFS low borderline
Rsat03G0016550 Flavonoid IFS medium borderline
Rsat03G0018640 Flavonoid IFS medium borderline
Rsat03G0023790 Flavonoid IFS low borderline
Rsat03G0023800 Flavonoid IFS low borderline
Rsat03G0030090 Flavonoid IFS medium borderline
Rsat03G0030110 Flavonoid IFS medium borderline
Rsat03G0032360 Flavonoid IFS medium borderline
Rsat04G0000620 Flavonoid IFS low borderline
Rsat04G0000630 Flavonoid IFS low borderline
Rsat04G0001200 Flavonoid IFS medium borderline
Rsat04G0001210 Flavonoid IFS medium borderline
Rsat04G0001230 Flavonoid IFS medium borderline
Rsat04G0001760 Flavonoid IFS low borderline
Rsat04G0010590 Flavonoid IFS low borderline
Rsat04G0012790 Flavonoid IFS medium borderline
Rsat04G0015200 Flavonoid IFS low borderline
Rsat04G0016690 Flavonoid IFS medium borderline
Rsat04G0016700 Flavonoid IFS medium pass
Rsat04G0016710 Flavonoid IFS low borderline
Rsat04G0016720 Flavonoid IFS medium borderline
Rsat04G0017110 Flavonoid IFS low borderline
Rsat04G0019970 Flavonoid IFS low borderline
Rsat04G0021200 Flavonoid IFS low borderline
Rsat04G0021360 Flavonoid IFS low borderline
Rsat04G0021370 Flavonoid IFS low borderline
Rsat04G0022290 Flavonoid IFS medium borderline
Rsat04G0022330 Flavonoid IFS medium borderline
Rsat04G0022340 Flavonoid IFS low borderline
Rsat04G0022380 Flavonoid IFS medium borderline
Rsat04G0022390 Flavonoid IFS medium borderline
Rsat04G0022690 Flavonoid IFS medium borderline
Rsat04G0027420 Flavonoid IFS medium borderline
Rsat04G0027480 Flavonoid IFS medium borderline
Rsat04G0037740 Flavonoid IFS low borderline
Rsat04G0039110 Flavonoid IFS low borderline
Rsat04G0039360 Flavonoid IFS medium borderline
Rsat04G0050910 Flavonoid IFS medium borderline
Rsat04G0051760 Flavonoid IFS medium borderline
Rsat04G0051970 Flavonoid IFS medium borderline
Rsat04G0053940 Flavonoid IFS medium borderline
Rsat04G0053950 Flavonoid IFS medium borderline
Rsat04G0053960 Flavonoid IFS medium borderline
Rsat04G0054110 Flavonoid IFS medium borderline
Rsat04G0055930 Flavonoid IFS medium borderline
Rsat04G0061140 Flavonoid IFS medium borderline