PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Gene Pathway Family Confidence Status
Rsat04G0061160 Flavonoid IFS medium borderline
Rsat05G0003520 Flavonoid IFS medium borderline
Rsat05G0005770 Flavonoid IFS low borderline
Rsat05G0005780 Flavonoid IFS low borderline
Rsat05G0005790 Flavonoid IFS low borderline
Rsat05G0007570 Flavonoid IFS low borderline
Rsat05G0007860 Flavonoid IFS medium borderline
Rsat05G0007880 Flavonoid IFS medium borderline
Rsat05G0007900 Flavonoid IFS medium borderline
Rsat05G0007910 Flavonoid IFS medium borderline
Rsat05G0009800 Flavonoid IFS medium borderline
Rsat05G0009810 Flavonoid IFS medium borderline
Rsat05G0011580 Flavonoid IFS low borderline
Rsat05G0013750 Flavonoid IFS medium borderline
Rsat05G0016010 Flavonoid IFS low borderline
Rsat05G0023580 Flavonoid IFS low borderline
Rsat05G0027170 Flavonoid IFS medium borderline
Rsat05G0033340 Flavonoid IFS low borderline
Rsat05G0043550 Flavonoid IFS medium borderline
Rsat05G0043560 Flavonoid IFS medium borderline
Rsat05G0043580 Flavonoid IFS medium borderline
Rsat05G0043600 Flavonoid IFS medium borderline
Rsat05G0044300 Flavonoid IFS low borderline
Rsat05G0047900 Flavonoid IFS low borderline
Rsat05G0047910 Flavonoid IFS low borderline
Rsat05G0047930 Flavonoid IFS low borderline
Rsat05G0047940 Flavonoid IFS low borderline
Rsat05G0047950 Flavonoid IFS low borderline
Rsat05G0048670 Flavonoid IFS low borderline
Rsat05G0051740 Flavonoid IFS medium borderline
Rsat05G0057590 Flavonoid IFS low borderline
Rsat06G0001510 Flavonoid IFS low borderline
Rsat06G0020700 Flavonoid IFS low borderline
Rsat06G0023700 Flavonoid IFS low borderline
Rsat06G0023900 Flavonoid IFS medium borderline
Rsat06G0026480 Flavonoid IFS low borderline
Rsat06G0031580 Flavonoid IFS low borderline
Rsat06G0031760 Flavonoid IFS low borderline
Rsat07G0000200 Flavonoid IFS medium borderline
Rsat07G0005730 Flavonoid IFS low borderline
Rsat07G0011600 Flavonoid IFS medium borderline
Rsat07G0012990 Flavonoid IFS low borderline
Rsat07G0022320 Flavonoid IFS medium borderline
Rsat07G0025360 Flavonoid IFS medium borderline
Rsat07G0025370 Flavonoid IFS medium borderline
Rsat08G0008010 Flavonoid IFS low borderline
Rsat08G0008180 Flavonoid IFS low borderline
Rsat08G0010080 Flavonoid IFS low borderline
Rsat08G0010650 Flavonoid IFS medium borderline
Rsat08G0015350 Flavonoid IFS medium borderline