PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Gene Pathway Family Confidence Status
Rsat08G0019170 Flavonoid IFS medium borderline
Rsat08G0019190 Flavonoid IFS medium borderline
Rsat08G0019210 Flavonoid IFS medium borderline
Rsat08G0019970 Flavonoid IFS low borderline
Rsat08G0019980 Flavonoid IFS low borderline
Rsat08G0025320 Flavonoid IFS low borderline
Rsat08G0026660 Flavonoid IFS low borderline
Rsat08G0027770 Flavonoid IFS medium borderline
Rsat08G0027790 Flavonoid IFS medium borderline
Rsat08G0027810 Flavonoid IFS medium borderline
Rsat08G0033130 Flavonoid IFS medium borderline
Rsat09G0001760 Flavonoid IFS low borderline
Rsat09G0002600 Flavonoid IFS low borderline
Rsat09G0005720 Flavonoid IFS low borderline
Rsat09G0008090 Flavonoid IFS low borderline
Rsat09G0008140 Flavonoid IFS medium borderline
Rsat09G0009070 Flavonoid IFS low borderline
Rsat09G0011150 Flavonoid IFS medium borderline
Rsat09G0015720 Flavonoid IFS low borderline
Rsat09G0016820 Flavonoid IFS medium borderline
Rsat09G0018610 Flavonoid IFS low borderline
Rsat09G0027080 Flavonoid IFS medium borderline
Rsat09G0027240 Flavonoid IFS low borderline
Rsat09G0027280 Flavonoid IFS low borderline
Rsat09G0030960 Flavonoid IFS medium borderline
Rsat09G0032320 Flavonoid IFS medium borderline
Rsat09G0038210 Flavonoid IFS low borderline
RsatScaffold15640003040 Flavonoid IFS low borderline
RsatScaffold16820003570 Flavonoid IFS low borderline
RsatScaffold22330005360 Flavonoid IFS low borderline
RsatScaffold24290006070 Flavonoid IFS low borderline
RsatScaffold2600007120 Flavonoid IFS low borderline
RsatScaffold26530007730 Flavonoid IFS medium borderline
RsatScaffold27160008020 Flavonoid IFS medium borderline
RsatScaffold38170012430 Flavonoid IFS medium borderline
RsatScaffold5350015420 Flavonoid IFS medium borderline
RsatScaffold55440015750 Flavonoid IFS medium borderline