PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.69% Phenylpropanoid pathway 22.16% Alkaloid pathway 21.12% Flavonoid pathway 11.24% Rosmarinic acid pathway 8.12% Steroid pathway 5.67%
Family Distribution
BAHD 6.76% C4H 6.48% C3'H/CYP98A 6.23% CYP76 4.36% POD 4.09% IFS 3.96% UGT 3.47% 4CL 3.43%
Other Families 61.22%
More Families (97)
T3O 152 3.22% UFGT 151 3.2% 7DLGT 143 3.03% DWF4/CYP90B1 138 2.92% F3H 125 2.65% NMT 107 2.27% F3'H/CYP75B 104 2.2% BR6OX2/CYP85A2 102 2.16% CODM/T6ODM 84 1.78% SMT1/SMT2/SMT3 79 1.67% CYP71 76 1.61% SGD 73 1.55% STR 69 1.46% CSE 64 1.36% H6H 58 1.23% TRI/TRII 57 1.21% T16H 49 1.04% COMT 48 1.02% CAD 46 0.97% PYKS 45 0.95% SLS 44 0.93% TPS 42 0.89% CAS 40 0.85% BBE 39 0.83% G8O/G8H 39 0.83% IFR 39 0.83% GES 37 0.78% LAC 37 0.78% F5H/CYP84A 36 0.76% 16OMT 34 0.72% IO 33 0.7% ANR 31 0.66% TAT 31 0.66% RAS 30 0.64% FNS 29 0.61% LAMT 27 0.57% CCR 27 0.57% HCT 26 0.55% F3'5'H/CYP75A 25 0.53% CYP90D1 25 0.53% 8HGO 22 0.47% GS 21 0.44% PAL 21 0.44% FPPS 21 0.44% ANS/LDOX 19 0.4% CPD/CYP90A1 19 0.4% BR6OX1/CYP85A1 17 0.36% CYP51G1 17 0.36% 7DLH 15 0.32% CPR 15 0.32% GGPPS 14 0.3% COR 12 0.25% NCS 12 0.25% SQE 12 0.25% AACT 12 0.25% CHS 11 0.23% CYP80B1 10 0.21% CCoAOMT 10 0.21% DFR 9 0.19% MPO 8 0.17% ROT3/CYP90C1 8 0.17% SQS/FDFT1 8 0.17% MVD 8 0.17% CNMT 7 0.15% PMT 7 0.15% ISY 7 0.15% CYP719 7 0.15% CYP80F1 7 0.15% HMGR 7 0.15% HPPR 6 0.13% SMO1/SMO2 6 0.13% TYDC_DDC 5 0.11% FLS 5 0.11% CHI 5 0.11% IDI 5 0.11% DXS 5 0.11% ADC 4 0.08% MCT/IspD 4 0.08% MVK 4 0.08% HMGS 4 0.08% DXR 4 0.08% XMT_MXMT_DXMT 3 0.06% TDC 3 0.06% HYD1 3 0.06% DET2 3 0.06% DWF7 3 0.06% CPI1 2 0.04% DWF5 2 0.04% HDR/IspH 2 0.04% MDS/IspF 2 0.04% ODC 1 0.02% DWF1 1 0.02% FK 1 0.02% CMK/IspE 1 0.02% GPPS 1 0.02% HDS/IspG 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
Reset
Gene Pathway Family Confidence Status Best Target
Rsat04G0048160 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Rsat04G0056730 Alkaloid NMT medium pass NMT__00022__sp_O65312_MEDEA_ARATH
Rsat04G0059730 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Rsat05G0001200 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Rsat05G0004630 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Rsat05G0007840 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Rsat05G0009130 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Rsat05G0018540 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Rsat05G0022440 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Rsat05G0027350 Alkaloid NMT medium borderline NMT__00062__sp_Q9SCP7_NAMT1_ARATH
Rsat05G0031200 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
Rsat05G0032890 Alkaloid NMT medium pass NMT__00022__sp_O65312_MEDEA_ARATH
Rsat05G0040640 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Rsat05G0042160 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
Rsat05G0043400 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Rsat05G0043620 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Rsat05G0045460 Alkaloid NMT medium borderline NMT__00057__sp_Q9FR44_PEAM1_ARATH
Rsat05G0047860 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Rsat05G0053500 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Rsat05G0055580 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Rsat05G0056040 Alkaloid NMT low borderline NMT__00054__sp_Q9FF80_SUVH1_ARATH
Rsat06G0005400 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Rsat06G0018370 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Rsat06G0018380 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Rsat06G0018850 Alkaloid NMT medium borderline NMT__00058__sp_Q9FZN8_TCS1_CAMSI
Rsat06G0020140 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Rsat06G0024480 Alkaloid NMT medium pass NMT__00022__sp_O65312_MEDEA_ARATH
Rsat07G0002480 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
Rsat07G0005860 Alkaloid NMT medium borderline NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Rsat07G0007280 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Rsat07G0008130 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Rsat07G0010250 Alkaloid NMT low borderline NMT__00039__sp_Q84W92_ANM13_ARATH
Rsat07G0010360 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Rsat07G0010670 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Rsat07G0012150 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Rsat07G0012390 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Rsat07G0016580 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Rsat07G0021610 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Rsat07G0024720 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Rsat07G0025590 Alkaloid NMT low borderline NMT__00041__sp_Q8GWT4_ANM15_ARATH
Rsat07G0031600 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Rsat08G0015850 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Rsat08G0015960 Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH
Rsat08G0021390 Alkaloid NMT medium pass NMT__00057__sp_Q9FR44_PEAM1_ARATH
Rsat08G0025310 Alkaloid NMT medium borderline NMT__00058__sp_Q9FZN8_TCS1_CAMSI
Rsat09G0004180 Alkaloid NMT medium pass NMT__00017__sp_F4K1J4_ATXR7_ARATH
Rsat09G0005250 Alkaloid NMT low borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
Rsat09G0015220 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Rsat09G0019870 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
Rsat09G0025120 Alkaloid NMT low borderline NMT__00020__sp_O23372_ATXR3_ARATH