PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Gene Pathway Family Confidence Status
Rsat07G0022900 Phenylpropanoid POD medium pass
Rsat07G0025820 Phenylpropanoid POD medium pass
Rsat07G0026160 Phenylpropanoid POD low borderline
Rsat07G0027050 Phenylpropanoid POD medium pass
Rsat07G0027560 Phenylpropanoid POD medium pass
Rsat08G0003310 Phenylpropanoid POD medium pass
Rsat08G0004080 Phenylpropanoid POD medium pass
Rsat08G0005920 Phenylpropanoid POD medium pass
Rsat08G0005940 Phenylpropanoid POD medium pass
Rsat08G0009600 Phenylpropanoid POD medium pass
Rsat08G0010160 Phenylpropanoid POD medium pass
Rsat08G0010230 Phenylpropanoid POD medium pass
Rsat08G0014820 Phenylpropanoid POD medium pass
Rsat08G0017910 Phenylpropanoid POD medium pass
Rsat08G0018760 Phenylpropanoid POD medium pass
Rsat08G0027210 Phenylpropanoid POD medium pass
Rsat08G0030480 Phenylpropanoid POD medium pass
Rsat08G0031460 Phenylpropanoid POD medium pass
Rsat08G0031470 Phenylpropanoid POD medium pass
Rsat09G0000200 Phenylpropanoid POD medium pass
Rsat09G0000820 Phenylpropanoid POD medium pass
Rsat09G0006520 Phenylpropanoid POD medium pass
Rsat09G0008650 Phenylpropanoid POD medium pass
Rsat09G0011520 Phenylpropanoid POD medium pass
Rsat09G0017000 Phenylpropanoid POD medium pass
Rsat09G0017660 Phenylpropanoid POD medium pass
Rsat09G0018000 Phenylpropanoid POD medium pass
Rsat09G0023190 Phenylpropanoid POD medium pass
Rsat09G0023430 Phenylpropanoid POD medium pass
Rsat09G0025360 Phenylpropanoid POD medium pass
Rsat09G0025760 Phenylpropanoid POD medium pass
Rsat09G0026030 Phenylpropanoid POD medium pass
Rsat09G0027920 Phenylpropanoid POD medium pass
Rsat09G0036410 Phenylpropanoid POD medium pass
Rsat09G0038720 Phenylpropanoid POD medium pass
Rsat09G0039530 Phenylpropanoid POD medium pass
RsatScaffold21830005280 Phenylpropanoid POD medium pass
RsatScaffold26640007790 Phenylpropanoid POD medium pass
RsatScaffold32850010020 Phenylpropanoid POD medium pass
RsatScaffold33150010170 Phenylpropanoid POD medium pass
RsatScaffold34650010990 Phenylpropanoid POD medium pass
RsatScaffold3590011660 Phenylpropanoid POD medium pass
RsatScaffold6380017040 Phenylpropanoid POD medium pass