PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.69% Phenylpropanoid pathway 22.16% Alkaloid pathway 21.12% Flavonoid pathway 11.24% Rosmarinic acid pathway 8.12% Steroid pathway 5.67%
Family Distribution
BAHD 6.76% C4H 6.48% C3'H/CYP98A 6.23% CYP76 4.36% POD 4.09% IFS 3.96% UGT 3.47% 4CL 3.43%
Other Families 61.22%
More Families (97)
T3O 152 3.22% UFGT 151 3.2% 7DLGT 143 3.03% DWF4/CYP90B1 138 2.92% F3H 125 2.65% NMT 107 2.27% F3'H/CYP75B 104 2.2% BR6OX2/CYP85A2 102 2.16% CODM/T6ODM 84 1.78% SMT1/SMT2/SMT3 79 1.67% CYP71 76 1.61% SGD 73 1.55% STR 69 1.46% CSE 64 1.36% H6H 58 1.23% TRI/TRII 57 1.21% T16H 49 1.04% COMT 48 1.02% CAD 46 0.97% PYKS 45 0.95% SLS 44 0.93% TPS 42 0.89% CAS 40 0.85% BBE 39 0.83% G8O/G8H 39 0.83% IFR 39 0.83% GES 37 0.78% LAC 37 0.78% F5H/CYP84A 36 0.76% 16OMT 34 0.72% IO 33 0.7% ANR 31 0.66% TAT 31 0.66% RAS 30 0.64% FNS 29 0.61% LAMT 27 0.57% CCR 27 0.57% HCT 26 0.55% F3'5'H/CYP75A 25 0.53% CYP90D1 25 0.53% 8HGO 22 0.47% GS 21 0.44% PAL 21 0.44% FPPS 21 0.44% ANS/LDOX 19 0.4% CPD/CYP90A1 19 0.4% BR6OX1/CYP85A1 17 0.36% CYP51G1 17 0.36% 7DLH 15 0.32% CPR 15 0.32% GGPPS 14 0.3% COR 12 0.25% NCS 12 0.25% SQE 12 0.25% AACT 12 0.25% CHS 11 0.23% CYP80B1 10 0.21% CCoAOMT 10 0.21% DFR 9 0.19% MPO 8 0.17% ROT3/CYP90C1 8 0.17% SQS/FDFT1 8 0.17% MVD 8 0.17% CNMT 7 0.15% PMT 7 0.15% ISY 7 0.15% CYP719 7 0.15% CYP80F1 7 0.15% HMGR 7 0.15% HPPR 6 0.13% SMO1/SMO2 6 0.13% TYDC_DDC 5 0.11% FLS 5 0.11% CHI 5 0.11% IDI 5 0.11% DXS 5 0.11% ADC 4 0.08% MCT/IspD 4 0.08% MVK 4 0.08% HMGS 4 0.08% DXR 4 0.08% XMT_MXMT_DXMT 3 0.06% TDC 3 0.06% HYD1 3 0.06% DET2 3 0.06% DWF7 3 0.06% CPI1 2 0.04% DWF5 2 0.04% HDR/IspH 2 0.04% MDS/IspF 2 0.04% ODC 1 0.02% DWF1 1 0.02% FK 1 0.02% CMK/IspE 1 0.02% GPPS 1 0.02% HDS/IspG 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SGD
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Gene Pathway Family Confidence Status
Rsat05G0022320 Alkaloid SGD medium pass
Rsat05G0022330 Alkaloid SGD medium pass
Rsat05G0022340 Alkaloid SGD medium pass
Rsat05G0040610 Alkaloid SGD medium pass
Rsat05G0052200 Alkaloid SGD medium pass
Rsat05G0052210 Alkaloid SGD low borderline
Rsat05G0053770 Alkaloid SGD low borderline
Rsat06G0001940 Alkaloid SGD medium pass
Rsat06G0014660 Alkaloid SGD medium pass
Rsat06G0024690 Alkaloid SGD medium pass
Rsat07G0016060 Alkaloid SGD medium pass
Rsat08G0010590 Alkaloid SGD medium pass
Rsat08G0010630 Alkaloid SGD medium pass
Rsat08G0010740 Alkaloid SGD medium pass
Rsat08G0023160 Alkaloid SGD medium pass
Rsat08G0032950 Alkaloid SGD medium pass
Rsat09G0003340 Alkaloid SGD medium pass
Rsat09G0029630 Alkaloid SGD medium pass
RsatScaffold10190000160 Alkaloid SGD medium pass
RsatScaffold10190000170 Alkaloid SGD medium pass
RsatScaffold23590005810 Alkaloid SGD medium pass
RsatScaffold34740011010 Alkaloid SGD medium pass
RsatScaffold35780011380 Alkaloid SGD medium pass