PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Rsat01G0001940 Alkaloid T3O medium borderline
Rsat01G0003810 Alkaloid T3O medium pass
Rsat01G0009390 Alkaloid T3O medium pass
Rsat01G0010780 Alkaloid T3O medium pass
Rsat01G0012950 Alkaloid T3O medium pass
Rsat01G0013870 Alkaloid T3O low borderline
Rsat01G0015220 Alkaloid T3O medium borderline
Rsat01G0015230 Alkaloid T3O medium borderline
Rsat01G0017320 Alkaloid T3O medium borderline
Rsat01G0018170 Alkaloid T3O medium borderline
Rsat01G0021530 Alkaloid T3O low borderline
Rsat01G0026680 Alkaloid T3O medium borderline
Rsat01G0026710 Alkaloid T3O medium borderline
Rsat01G0026720 Alkaloid T3O medium borderline
Rsat01G0026740 Alkaloid T3O medium borderline
Rsat01G0026930 Alkaloid T3O medium pass
Rsat01G0039090 Alkaloid T3O medium pass
Rsat01G0042810 Alkaloid T3O medium borderline
Rsat01G0042840 Alkaloid T3O medium borderline
Rsat01G0042850 Alkaloid T3O medium borderline
Rsat01G0042860 Alkaloid T3O medium borderline
Rsat01G0042880 Alkaloid T3O medium borderline
Rsat01G0042890 Alkaloid T3O medium borderline
Rsat01G0044620 Alkaloid T3O medium pass
Rsat01G0045160 Alkaloid T3O medium borderline
Rsat01G0045170 Alkaloid T3O medium borderline
Rsat01G0047020 Alkaloid T3O medium borderline
Rsat01G0047710 Alkaloid T3O medium pass
Rsat01G0048950 Alkaloid T3O medium pass
Rsat01G0053000 Alkaloid T3O medium borderline
Rsat01G0053010 Alkaloid T3O medium borderline
Rsat01G0053020 Alkaloid T3O medium borderline
Rsat01G0053250 Alkaloid T3O medium borderline
Rsat01G0055130 Alkaloid T3O medium borderline
Rsat01G0059400 Alkaloid T3O medium pass
Rsat02G0001670 Alkaloid T3O medium borderline
Rsat02G0001680 Alkaloid T3O medium borderline
Rsat02G0001700 Alkaloid T3O medium borderline
Rsat02G0001740 Alkaloid T3O medium borderline
Rsat02G0001750 Alkaloid T3O medium borderline
Rsat02G0002470 Alkaloid T3O medium pass
Rsat02G0002560 Alkaloid T3O medium borderline
Rsat02G0006130 Alkaloid T3O medium borderline
Rsat02G0006140 Alkaloid T3O medium borderline
Rsat02G0015000 Alkaloid T3O medium borderline
Rsat02G0015590 Alkaloid T3O medium pass
Rsat02G0018170 Alkaloid T3O medium borderline
Rsat02G0018190 Alkaloid T3O medium borderline
Rsat02G0018510 Alkaloid T3O medium pass
Rsat02G0021050 Alkaloid T3O medium pass