PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Rsat05G0033340 Alkaloid T3O low borderline
Rsat05G0043560 Alkaloid T3O medium borderline
Rsat05G0043600 Alkaloid T3O medium borderline
Rsat05G0044300 Alkaloid T3O medium pass
Rsat05G0048670 Alkaloid T3O medium pass
Rsat05G0051740 Alkaloid T3O medium borderline
Rsat05G0057590 Alkaloid T3O low borderline
Rsat06G0026480 Alkaloid T3O medium pass
Rsat06G0031600 Alkaloid T3O medium borderline
Rsat06G0031760 Alkaloid T3O medium pass
Rsat07G0001050 Alkaloid T3O medium borderline
Rsat07G0019080 Alkaloid T3O medium borderline
Rsat07G0022310 Alkaloid T3O medium borderline
Rsat07G0022320 Alkaloid T3O medium borderline
Rsat07G0023780 Alkaloid T3O medium borderline
Rsat07G0025360 Alkaloid T3O medium borderline
Rsat07G0025370 Alkaloid T3O medium borderline
Rsat07G0027190 Alkaloid T3O medium pass
Rsat07G0031080 Alkaloid T3O medium borderline
Rsat08G0008180 Alkaloid T3O medium pass
Rsat08G0010650 Alkaloid T3O medium borderline
Rsat08G0013210 Alkaloid T3O medium borderline
Rsat08G0015350 Alkaloid T3O medium borderline
Rsat08G0019170 Alkaloid T3O medium borderline
Rsat08G0019210 Alkaloid T3O medium borderline
Rsat08G0020000 Alkaloid T3O medium pass
Rsat08G0025320 Alkaloid T3O medium pass
Rsat08G0027770 Alkaloid T3O medium borderline
Rsat08G0027780 Alkaloid T3O medium borderline
Rsat08G0027790 Alkaloid T3O medium borderline
Rsat09G0001760 Alkaloid T3O low borderline
Rsat09G0002610 Alkaloid T3O medium borderline
Rsat09G0005720 Alkaloid T3O medium pass
Rsat09G0008100 Alkaloid T3O medium borderline
Rsat09G0008110 Alkaloid T3O medium borderline
Rsat09G0008140 Alkaloid T3O medium borderline
Rsat09G0009070 Alkaloid T3O medium pass
Rsat09G0011150 Alkaloid T3O medium borderline
Rsat09G0015720 Alkaloid T3O medium pass
Rsat09G0016820 Alkaloid T3O medium borderline
Rsat09G0018610 Alkaloid T3O low borderline
Rsat09G0027080 Alkaloid T3O medium borderline
Rsat09G0030960 Alkaloid T3O medium borderline
Rsat09G0035160 Alkaloid T3O medium pass
RsatScaffold16820003570 Alkaloid T3O medium pass
RsatScaffold24290006070 Alkaloid T3O low borderline
RsatScaffold24510006150 Alkaloid T3O medium borderline
RsatScaffold26530007730 Alkaloid T3O medium borderline
RsatScaffold38170012430 Alkaloid T3O medium borderline
RsatScaffold46150014290 Alkaloid T3O medium borderline