PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
Rsat02G0050740 Flavonoid UFGT low borderline
Rsat03G0001940 Flavonoid UFGT high pass
Rsat03G0009980 Flavonoid UFGT high pass
Rsat03G0009990 Flavonoid UFGT high pass
Rsat03G0012230 Flavonoid UFGT high pass
Rsat03G0012240 Flavonoid UFGT medium pass
Rsat03G0013050 Flavonoid UFGT high pass
Rsat03G0013130 Flavonoid UFGT medium pass
Rsat03G0013140 Flavonoid UFGT medium pass
Rsat03G0013150 Flavonoid UFGT medium pass
Rsat03G0013160 Flavonoid UFGT high pass
Rsat03G0014970 Flavonoid UFGT medium pass
Rsat03G0018560 Flavonoid UFGT medium pass
Rsat03G0018570 Flavonoid UFGT medium pass
Rsat03G0018580 Flavonoid UFGT medium pass
Rsat03G0023010 Flavonoid UFGT medium pass
Rsat03G0023040 Flavonoid UFGT low borderline
Rsat03G0024890 Flavonoid UFGT high pass
Rsat03G0028200 Flavonoid UFGT high pass
Rsat03G0029720 Flavonoid UFGT medium pass
Rsat03G0031140 Flavonoid UFGT medium pass
Rsat04G0012800 Flavonoid UFGT medium pass
Rsat04G0012880 Flavonoid UFGT high pass
Rsat04G0013830 Flavonoid UFGT medium pass
Rsat04G0013840 Flavonoid UFGT medium pass
Rsat04G0029810 Flavonoid UFGT high pass
Rsat04G0030200 Flavonoid UFGT medium pass
Rsat04G0036210 Flavonoid UFGT high pass
Rsat04G0039060 Flavonoid UFGT medium pass
Rsat04G0042520 Flavonoid UFGT medium pass
Rsat04G0044790 Flavonoid UFGT high pass
Rsat04G0044800 Flavonoid UFGT high pass
Rsat04G0044830 Flavonoid UFGT medium pass
Rsat04G0046410 Flavonoid UFGT medium pass
Rsat04G0048170 Flavonoid UFGT medium pass
Rsat04G0048180 Flavonoid UFGT medium pass
Rsat04G0051460 Flavonoid UFGT high pass
Rsat05G0008550 Flavonoid UFGT medium pass
Rsat05G0008560 Flavonoid UFGT medium pass
Rsat05G0008570 Flavonoid UFGT high pass
Rsat05G0013710 Flavonoid UFGT high pass
Rsat05G0014540 Flavonoid UFGT medium pass
Rsat05G0015020 Flavonoid UFGT medium pass
Rsat05G0025370 Flavonoid UFGT high pass
Rsat05G0025380 Flavonoid UFGT medium pass
Rsat05G0027320 Flavonoid UFGT medium pass
Rsat05G0027330 Flavonoid UFGT high pass
Rsat05G0027340 Flavonoid UFGT medium pass
Rsat05G0027990 Flavonoid UFGT high pass
Rsat05G0030470 Flavonoid UFGT high pass