PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Rsat08G0012960 Alkaloid GES medium pass
Rsat09G0002300 Alkaloid GES medium pass
Rsat09G0005810 Alkaloid GES medium pass
Rsat09G0011270 Alkaloid GES low borderline
Rsat09G0012260 Alkaloid GES medium pass
Rsat09G0020560 Alkaloid GES low borderline
Rsat09G0030870 Alkaloid GES medium pass
Rsat09G0030880 Alkaloid GES medium pass
Rsat09G0030900 Alkaloid GES medium pass
Rsat09G0041010 Alkaloid GES medium pass
Rsat01G0016670 Alkaloid GS high pass
Rsat02G0001330 Alkaloid GS high pass
Rsat02G0001340 Alkaloid GS high pass
Rsat02G0004190 Alkaloid GS medium pass
Rsat02G0013830 Alkaloid GS low borderline
Rsat02G0014130 Alkaloid GS low borderline
Rsat02G0038740 Alkaloid GS low borderline
Rsat04G0000580 Alkaloid GS high pass
Rsat05G0005970 Alkaloid GS low borderline
Rsat05G0011730 Alkaloid GS medium pass
Rsat05G0047590 Alkaloid GS low borderline
Rsat06G0015580 Alkaloid GS low borderline
Rsat07G0005690 Alkaloid GS low borderline
Rsat08G0007880 Alkaloid GS low borderline
Rsat08G0019490 Alkaloid GS high pass
Rsat08G0019500 Alkaloid GS high pass
Rsat09G0012270 Alkaloid GS low borderline
Rsat09G0027940 Alkaloid GS medium pass
Rsat09G0035590 Alkaloid GS medium pass
RsatScaffold13750002110 Alkaloid GS high pass
RsatScaffold32060009600 Alkaloid GS high pass
Rsat01G0006510 Alkaloid H6H low borderline
Rsat01G0015590 Alkaloid H6H low borderline
Rsat01G0021310 Alkaloid H6H medium borderline
Rsat01G0023570 Alkaloid H6H medium borderline
Rsat01G0026130 Alkaloid H6H low borderline
Rsat01G0049090 Alkaloid H6H medium borderline
Rsat01G0054410 Alkaloid H6H medium borderline
Rsat01G0058280 Alkaloid H6H low borderline
Rsat01G0058290 Alkaloid H6H low borderline
Rsat01G0060870 Alkaloid H6H medium borderline
Rsat01G0060880 Alkaloid H6H low borderline
Rsat02G0024070 Alkaloid H6H medium borderline
Rsat02G0040570 Alkaloid H6H low borderline
Rsat02G0050070 Alkaloid H6H medium borderline
Rsat02G0050810 Alkaloid H6H low borderline
Rsat02G0051790 Alkaloid H6H low borderline
Rsat03G0019510 Alkaloid H6H medium borderline
Rsat03G0032320 Alkaloid H6H low borderline
Rsat03G0032340 Alkaloid H6H low borderline