PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Rsat03G0019520 Alkaloid G8O/G8H low borderline
Rsat04G0001220 Alkaloid G8O/G8H medium borderline
Rsat04G0016700 Alkaloid G8O/G8H medium borderline
Rsat04G0016710 Alkaloid G8O/G8H medium borderline
Rsat04G0016720 Alkaloid G8O/G8H medium borderline
Rsat04G0022340 Alkaloid G8O/G8H medium borderline
Rsat04G0050910 Alkaloid G8O/G8H medium borderline
Rsat04G0053930 Alkaloid G8O/G8H medium borderline
Rsat04G0061150 Alkaloid G8O/G8H low borderline
Rsat04G0061170 Alkaloid G8O/G8H medium borderline
Rsat05G0007890 Alkaloid G8O/G8H low borderline
Rsat05G0009800 Alkaloid G8O/G8H medium pass
Rsat05G0043570 Alkaloid G8O/G8H medium pass
Rsat07G0011600 Alkaloid G8O/G8H medium borderline
Rsat08G0006290 Alkaloid G8O/G8H medium borderline
Rsat09G0002600 Alkaloid G8O/G8H medium borderline
Rsat09G0003600 Alkaloid G8O/G8H medium borderline
Rsat09G0032320 Alkaloid G8O/G8H medium borderline
RsatScaffold27160008020 Alkaloid G8O/G8H medium borderline
RsatScaffold5350015400 Alkaloid G8O/G8H medium borderline
RsatScaffold55440015750 Alkaloid G8O/G8H medium borderline
RsatScaffold61520016710 Alkaloid G8O/G8H medium borderline
RsatScaffold7630018450 Alkaloid G8O/G8H low borderline
Rsat01G0018150 Alkaloid GES medium pass
Rsat01G0034410 Alkaloid GES medium pass
Rsat01G0038530 Alkaloid GES low borderline
Rsat01G0038560 Alkaloid GES low borderline
Rsat01G0058900 Alkaloid GES medium pass
Rsat02G0001520 Alkaloid GES low borderline
Rsat02G0014980 Alkaloid GES low borderline
Rsat02G0017500 Alkaloid GES medium pass
Rsat02G0028740 Alkaloid GES medium pass
Rsat02G0035180 Alkaloid GES medium pass
Rsat03G0012130 Alkaloid GES medium pass
Rsat03G0028060 Alkaloid GES medium pass
Rsat03G0032150 Alkaloid GES low borderline
Rsat03G0033310 Alkaloid GES medium pass
Rsat04G0001090 Alkaloid GES low borderline
Rsat04G0011950 Alkaloid GES medium pass
Rsat04G0015680 Alkaloid GES medium pass
Rsat04G0015700 Alkaloid GES medium pass
Rsat04G0022660 Alkaloid GES medium pass
Rsat04G0027430 Alkaloid GES medium pass
Rsat04G0027440 Alkaloid GES medium pass
Rsat04G0030100 Alkaloid GES medium pass
Rsat04G0030110 Alkaloid GES medium pass
Rsat04G0031790 Alkaloid GES medium pass
Rsat04G0041890 Alkaloid GES medium pass
Rsat05G0005750 Alkaloid GES medium pass
Rsat07G0005060 Alkaloid GES low borderline