PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Rsat01G0007120 Alkaloid COR medium pass
Rsat01G0007130 Alkaloid COR medium pass
Rsat01G0016330 Alkaloid COR medium pass
Rsat01G0048560 Alkaloid COR medium pass
Rsat03G0019190 Alkaloid COR medium pass
Rsat03G0019200 Alkaloid COR medium pass
Rsat05G0010800 Alkaloid COR medium pass
Rsat05G0026730 Alkaloid COR medium pass
Rsat09G0002960 Alkaloid COR medium pass
Rsat09G0002990 Alkaloid COR medium pass
Rsat02G0036670 Alkaloid CYP719 medium borderline
Rsat04G0022570 Alkaloid CYP719 low borderline
Rsat04G0060710 Alkaloid CYP719 medium borderline
Rsat05G0016220 Alkaloid CYP719 medium borderline
Rsat08G0028510 Alkaloid CYP719 medium borderline
Rsat09G0022810 Alkaloid CYP719 medium borderline
Rsat09G0038210 Alkaloid CYP719 medium borderline
Rsat01G0009190 Alkaloid CYP80B1 medium borderline
Rsat01G0042800 Alkaloid CYP80B1 medium borderline
Rsat01G0051470 Alkaloid CYP80B1 medium borderline
Rsat01G0051480 Alkaloid CYP80B1 medium borderline
Rsat04G0017110 Alkaloid CYP80B1 medium borderline
Rsat04G0034860 Alkaloid CYP80B1 medium borderline
Rsat04G0055530 Alkaloid CYP80B1 medium borderline
Rsat06G0023260 Alkaloid CYP80B1 medium borderline
Rsat07G0023770 Alkaloid CYP80B1 medium borderline
Rsat08G0009320 Alkaloid CYP80B1 low borderline
Rsat03G0015170 Alkaloid CYP80F1 medium borderline
Rsat04G0000630 Alkaloid CYP80F1 medium borderline
Rsat06G0009280 Alkaloid CYP80F1 low borderline
Rsat06G0013980 Alkaloid CYP80F1 medium borderline
Rsat06G0031580 Alkaloid CYP80F1 medium borderline
Rsat08G0027760 Alkaloid CYP80F1 medium borderline
Rsat09G0008090 Alkaloid CYP80F1 medium borderline
Rsat01G0017700 Alkaloid G8O/G8H medium borderline
Rsat01G0018130 Alkaloid G8O/G8H medium borderline
Rsat01G0026730 Alkaloid G8O/G8H medium borderline
Rsat01G0042910 Alkaloid G8O/G8H low borderline
Rsat01G0042920 Alkaloid G8O/G8H medium borderline
Rsat01G0044010 Alkaloid G8O/G8H medium borderline
Rsat01G0046580 Alkaloid G8O/G8H medium borderline
Rsat02G0001720 Alkaloid G8O/G8H medium borderline
Rsat02G0014990 Alkaloid G8O/G8H medium borderline
Rsat02G0018180 Alkaloid G8O/G8H medium borderline
Rsat02G0029510 Alkaloid G8O/G8H medium borderline
Rsat02G0029520 Alkaloid G8O/G8H medium borderline
Rsat02G0036210 Alkaloid G8O/G8H medium borderline
Rsat02G0036240 Alkaloid G8O/G8H medium borderline
Rsat03G0001950 Alkaloid G8O/G8H medium borderline
Rsat03G0011270 Alkaloid G8O/G8H low borderline