PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Rsat07G0028480 Steroid SMT1/SMT2/SMT3 medium pass
Rsat08G0007620 Steroid SMT1/SMT2/SMT3 low borderline
Rsat08G0008150 Steroid SMT1/SMT2/SMT3 low borderline
Rsat08G0014660 Steroid SMT1/SMT2/SMT3 medium pass
Rsat08G0015080 Steroid SMT1/SMT2/SMT3 low borderline
Rsat08G0015970 Steroid SMT1/SMT2/SMT3 medium pass
Rsat08G0021390 Steroid SMT1/SMT2/SMT3 medium pass
Rsat08G0022050 Steroid SMT1/SMT2/SMT3 low borderline
Rsat08G0028810 Steroid SMT1/SMT2/SMT3 medium pass
Rsat09G0018740 Steroid SMT1/SMT2/SMT3 medium pass
Rsat09G0035180 Steroid SMT1/SMT2/SMT3 medium pass
Rsat09G0035190 Steroid SMT1/SMT2/SMT3 medium pass
RsatScaffold19650004650 Steroid SMT1/SMT2/SMT3 low borderline
RsatScaffold22990005650 Steroid SMT1/SMT2/SMT3 low borderline
RsatScaffold29460008670 Steroid SMT1/SMT2/SMT3 medium pass
RsatScaffold4290013640 Steroid SMT1/SMT2/SMT3 medium pass
Rsat01G0015880 Steroid SQE medium pass
Rsat01G0047350 Steroid SQE medium pass
Rsat01G0047360 Steroid SQE low borderline
Rsat01G0047370 Steroid SQE medium pass
Rsat02G0001480 Steroid SQE medium pass
Rsat04G0015880 Steroid SQE medium pass
Rsat04G0015890 Steroid SQE medium pass
Rsat04G0015900 Steroid SQE medium pass
Rsat04G0039210 Steroid SQE medium pass
Rsat08G0010980 Steroid SQE low borderline
Rsat09G0003270 Steroid SQE medium pass
Rsat09G0011460 Steroid SQE medium pass
Rsat02G0003830 Steroid SQS/FDFT1 high pass
Rsat02G0003840 Steroid SQS/FDFT1 high pass
Rsat02G0019500 Steroid SQS/FDFT1 medium pass
Rsat03G0006720 Steroid SQS/FDFT1 low borderline
Rsat04G0002650 Steroid SQS/FDFT1 high pass
Rsat07G0028820 Steroid SQS/FDFT1 medium pass
Rsat08G0014200 Steroid SQS/FDFT1 high pass
Rsat09G0013190 Steroid SQS/FDFT1 low borderline