PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Rsat04G0039670 Alkaloid IO medium pass
Rsat04G0051750 Alkaloid IO medium borderline
Rsat04G0051760 Alkaloid IO medium borderline
Rsat04G0057200 Alkaloid IO medium borderline
Rsat04G0058060 Alkaloid IO medium borderline
Rsat05G0007860 Alkaloid IO medium borderline
Rsat05G0007880 Alkaloid IO medium borderline
Rsat05G0007900 Alkaloid IO medium borderline
Rsat05G0021020 Alkaloid IO medium borderline
Rsat05G0033150 Alkaloid IO medium borderline
Rsat05G0051280 Alkaloid IO medium borderline
Rsat06G0021180 Alkaloid IO medium borderline
Rsat06G0023900 Alkaloid IO medium borderline
Rsat06G0023950 Alkaloid IO medium borderline
Rsat07G0000200 Alkaloid IO medium borderline
Rsat07G0021810 Alkaloid IO medium pass
Rsat07G0024860 Alkaloid IO medium borderline
Rsat07G0030810 Alkaloid IO medium borderline
Rsat08G0019180 Alkaloid IO medium borderline
Rsat08G0019190 Alkaloid IO medium borderline
Rsat08G0019650 Alkaloid IO medium pass
Rsat08G0033130 Alkaloid IO medium borderline
Rsat02G0011710 Alkaloid ISY high pass
Rsat03G0019140 Alkaloid ISY medium pass
Rsat04G0008090 Alkaloid ISY high pass
Rsat06G0000490 Alkaloid ISY low borderline
Rsat08G0001130 Alkaloid ISY medium pass
Rsat08G0018140 Alkaloid ISY medium pass
Rsat09G0033390 Alkaloid ISY medium pass
Rsat01G0023330 Alkaloid LAMT medium borderline
Rsat01G0033480 Alkaloid LAMT medium borderline
Rsat02G0002370 Alkaloid LAMT medium borderline
Rsat02G0009830 Alkaloid LAMT medium pass
Rsat02G0032690 Alkaloid LAMT medium borderline
Rsat02G0042140 Alkaloid LAMT medium borderline
Rsat03G0001360 Alkaloid LAMT medium borderline
Rsat03G0011900 Alkaloid LAMT medium borderline
Rsat04G0001690 Alkaloid LAMT medium borderline
Rsat04G0036180 Alkaloid LAMT medium borderline
Rsat05G0004270 Alkaloid LAMT medium borderline
Rsat05G0027790 Alkaloid LAMT low borderline
Rsat05G0050460 Alkaloid LAMT medium borderline
Rsat05G0050480 Alkaloid LAMT medium borderline
Rsat05G0050510 Alkaloid LAMT medium borderline
Rsat06G0022060 Alkaloid LAMT medium borderline
Rsat07G0000580 Alkaloid LAMT medium borderline
Rsat07G0015680 Alkaloid LAMT medium borderline
Rsat07G0027530 Alkaloid LAMT low borderline
Rsat07G0030980 Alkaloid LAMT medium borderline
Rsat07G0031000 Alkaloid LAMT medium borderline