PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Rsat08G0026090 Phenylpropanoid LAC medium pass
Rsat09G0000570 Phenylpropanoid LAC low borderline
Rsat09G0033530 Phenylpropanoid LAC medium pass
Rsat09G0034380 Phenylpropanoid LAC medium pass
RsatScaffold3740012210 Phenylpropanoid LAC low borderline
Rsat01G0007660 Phenylpropanoid PAL high pass
Rsat01G0064820 Phenylpropanoid PAL low borderline
Rsat03G0018680 Phenylpropanoid PAL medium pass
Rsat04G0048330 Phenylpropanoid PAL high pass
Rsat04G0057380 Phenylpropanoid PAL high pass
Rsat05G0027200 Phenylpropanoid PAL high pass
Rsat05G0051510 Phenylpropanoid PAL high pass
Rsat01G0000010 Phenylpropanoid POD medium pass
Rsat01G0008740 Phenylpropanoid POD medium pass
Rsat01G0009710 Phenylpropanoid POD medium pass
Rsat01G0011400 Phenylpropanoid POD medium pass
Rsat01G0013740 Phenylpropanoid POD medium pass
Rsat01G0014120 Phenylpropanoid POD medium pass
Rsat01G0014130 Phenylpropanoid POD medium pass
Rsat01G0017040 Phenylpropanoid POD medium pass
Rsat01G0018480 Phenylpropanoid POD medium pass
Rsat01G0018700 Phenylpropanoid POD medium pass
Rsat01G0021730 Phenylpropanoid POD low borderline
Rsat01G0022010 Phenylpropanoid POD medium pass
Rsat01G0023390 Phenylpropanoid POD medium pass
Rsat01G0025800 Phenylpropanoid POD medium pass
Rsat01G0026300 Phenylpropanoid POD low borderline
Rsat01G0033470 Phenylpropanoid POD medium pass
Rsat01G0035020 Phenylpropanoid POD medium pass
Rsat01G0035030 Phenylpropanoid POD medium pass
Rsat01G0039910 Phenylpropanoid POD medium pass
Rsat01G0049270 Phenylpropanoid POD medium pass
Rsat01G0050540 Phenylpropanoid POD low borderline
Rsat01G0050550 Phenylpropanoid POD medium pass
Rsat01G0052090 Phenylpropanoid POD medium pass
Rsat01G0054210 Phenylpropanoid POD medium pass
Rsat01G0056740 Phenylpropanoid POD medium pass
Rsat01G0060680 Phenylpropanoid POD low borderline
Rsat01G0061580 Phenylpropanoid POD low borderline
Rsat01G0065190 Phenylpropanoid POD medium pass
Rsat02G0001580 Phenylpropanoid POD medium pass
Rsat02G0002440 Phenylpropanoid POD medium pass
Rsat02G0002720 Phenylpropanoid POD medium pass
Rsat02G0004490 Phenylpropanoid POD medium pass
Rsat02G0007100 Phenylpropanoid POD medium pass
Rsat02G0010210 Phenylpropanoid POD medium pass
Rsat02G0010260 Phenylpropanoid POD medium pass
Rsat02G0013520 Phenylpropanoid POD medium pass
Rsat02G0016800 Phenylpropanoid POD medium pass
Rsat02G0017870 Phenylpropanoid POD medium pass