PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Rsat06G0018850 Alkaloid NMT medium borderline
Rsat06G0020140 Alkaloid NMT medium pass
Rsat06G0024480 Alkaloid NMT medium pass
Rsat07G0002480 Alkaloid NMT medium pass
Rsat07G0005860 Alkaloid NMT medium borderline
Rsat07G0007280 Alkaloid NMT medium pass
Rsat07G0008130 Alkaloid NMT low borderline
Rsat07G0010250 Alkaloid NMT low borderline
Rsat07G0010360 Alkaloid NMT medium borderline
Rsat07G0010670 Alkaloid NMT medium borderline
Rsat07G0012150 Alkaloid NMT medium borderline
Rsat07G0012390 Alkaloid NMT medium pass
Rsat07G0016580 Alkaloid NMT medium pass
Rsat07G0021610 Alkaloid NMT medium pass
Rsat07G0024720 Alkaloid NMT medium pass
Rsat07G0025590 Alkaloid NMT low borderline
Rsat07G0031600 Alkaloid NMT low borderline
Rsat08G0015850 Alkaloid NMT medium pass
Rsat08G0015960 Alkaloid NMT low borderline
Rsat08G0021390 Alkaloid NMT medium pass
Rsat08G0025310 Alkaloid NMT medium borderline
Rsat09G0004180 Alkaloid NMT medium pass
Rsat09G0005250 Alkaloid NMT low borderline
Rsat09G0015220 Alkaloid NMT low borderline
Rsat09G0019870 Alkaloid NMT medium pass
Rsat09G0025120 Alkaloid NMT low borderline
Rsat09G0028860 Alkaloid NMT low borderline
Rsat09G0029340 Alkaloid NMT medium pass
Rsat09G0035320 Alkaloid NMT medium pass
Rsat09G0039450 Alkaloid NMT medium pass
RsatScaffold13600002000 Alkaloid NMT low borderline
RsatScaffold3010008880 Alkaloid NMT medium borderline
RsatScaffold3010008900 Alkaloid NMT medium borderline
Rsat01G0060790 Alkaloid ODC low borderline
Rsat01G0021640 Alkaloid PMT low borderline
Rsat01G0037330 Alkaloid PMT low borderline
Rsat02G0027130 Alkaloid PMT medium borderline
Rsat05G0011660 Alkaloid PMT medium pass
Rsat06G0015530 Alkaloid PMT medium borderline
Rsat08G0010070 Alkaloid PMT low borderline
Rsat09G0028570 Alkaloid PMT medium borderline
Rsat01G0000960 Alkaloid PYKS low borderline
Rsat01G0013230 Alkaloid PYKS low borderline
Rsat01G0030200 Alkaloid PYKS low borderline
Rsat01G0032500 Alkaloid PYKS low borderline
Rsat01G0033290 Alkaloid PYKS low borderline
Rsat01G0033300 Alkaloid PYKS low borderline
Rsat01G0038060 Alkaloid PYKS low borderline
Rsat01G0038090 Alkaloid PYKS low borderline
Rsat01G0045080 Alkaloid PYKS high pass