PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Rsat01G0020260 Alkaloid 7DLGT high pass
Rsat01G0020280 Alkaloid 7DLGT high pass
Rsat01G0028890 Alkaloid 7DLGT medium pass
Rsat01G0028900 Alkaloid 7DLGT medium pass
Rsat01G0028910 Alkaloid 7DLGT medium pass
Rsat01G0032680 Alkaloid 7DLGT low borderline
Rsat01G0035440 Alkaloid 7DLGT medium pass
Rsat01G0042170 Alkaloid 7DLGT medium pass
Rsat01G0042180 Alkaloid 7DLGT low borderline
Rsat01G0054000 Alkaloid 7DLGT medium pass
Rsat01G0054200 Alkaloid 7DLGT low borderline
Rsat01G0054220 Alkaloid 7DLGT medium pass
Rsat01G0054320 Alkaloid 7DLGT low borderline
Rsat02G0002170 Alkaloid 7DLGT low borderline
Rsat02G0004270 Alkaloid 7DLGT low borderline
Rsat02G0004280 Alkaloid 7DLGT low borderline
Rsat02G0004290 Alkaloid 7DLGT low borderline
Rsat02G0018330 Alkaloid 7DLGT high pass
Rsat02G0018410 Alkaloid 7DLGT medium pass
Rsat02G0018550 Alkaloid 7DLGT medium pass
Rsat02G0018560 Alkaloid 7DLGT medium pass
Rsat02G0019570 Alkaloid 7DLGT low borderline
Rsat02G0019590 Alkaloid 7DLGT low borderline
Rsat02G0027770 Alkaloid 7DLGT low borderline
Rsat02G0027780 Alkaloid 7DLGT low borderline
Rsat02G0030880 Alkaloid 7DLGT medium pass
Rsat02G0034980 Alkaloid 7DLGT low borderline
Rsat02G0034990 Alkaloid 7DLGT low borderline
Rsat02G0037030 Alkaloid 7DLGT high pass
Rsat02G0037040 Alkaloid 7DLGT high pass
Rsat02G0039030 Alkaloid 7DLGT low borderline
Rsat02G0050710 Alkaloid 7DLGT medium pass
Rsat03G0001940 Alkaloid 7DLGT high pass
Rsat03G0009980 Alkaloid 7DLGT medium pass
Rsat03G0009990 Alkaloid 7DLGT high pass
Rsat03G0012230 Alkaloid 7DLGT low borderline
Rsat03G0012240 Alkaloid 7DLGT low borderline
Rsat03G0013050 Alkaloid 7DLGT low borderline
Rsat03G0013160 Alkaloid 7DLGT low borderline
Rsat03G0014970 Alkaloid 7DLGT low borderline
Rsat03G0018560 Alkaloid 7DLGT medium pass
Rsat03G0018570 Alkaloid 7DLGT medium pass
Rsat03G0018580 Alkaloid 7DLGT medium pass
Rsat03G0022990 Alkaloid 7DLGT low borderline
Rsat03G0023010 Alkaloid 7DLGT low borderline
Rsat03G0023040 Alkaloid 7DLGT low borderline
Rsat03G0024890 Alkaloid 7DLGT medium pass
Rsat03G0028200 Alkaloid 7DLGT medium pass
Rsat03G0029720 Alkaloid 7DLGT low borderline
Rsat03G0031140 Alkaloid 7DLGT high pass