PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Rsat01G0053000 Alkaloid T3O medium borderline
Rsat01G0053010 Alkaloid T3O medium borderline
Rsat01G0053020 Alkaloid T3O medium borderline
Rsat01G0053250 Alkaloid T3O medium borderline
Rsat01G0055130 Alkaloid T3O medium borderline
Rsat01G0059400 Alkaloid T3O medium pass
Rsat02G0001670 Alkaloid T3O medium borderline
Rsat02G0001680 Alkaloid T3O medium borderline
Rsat02G0001700 Alkaloid T3O medium borderline
Rsat02G0001740 Alkaloid T3O medium borderline
Rsat02G0001750 Alkaloid T3O medium borderline
Rsat02G0002470 Alkaloid T3O medium pass
Rsat02G0002560 Alkaloid T3O medium borderline
Rsat02G0006130 Alkaloid T3O medium borderline
Rsat02G0006140 Alkaloid T3O medium borderline
Rsat02G0015000 Alkaloid T3O medium borderline
Rsat02G0015590 Alkaloid T3O medium pass
Rsat02G0018170 Alkaloid T3O medium borderline
Rsat02G0018190 Alkaloid T3O medium borderline
Rsat02G0018510 Alkaloid T3O medium pass
Rsat02G0021050 Alkaloid T3O medium pass
Rsat02G0024650 Alkaloid T3O medium pass
Rsat02G0024800 Alkaloid T3O low borderline
Rsat02G0041640 Alkaloid T3O medium borderline
Rsat03G0001730 Alkaloid T3O low borderline
Rsat03G0010420 Alkaloid T3O low borderline
Rsat03G0011260 Alkaloid T3O medium borderline
Rsat03G0016550 Alkaloid T3O medium borderline
Rsat03G0018640 Alkaloid T3O medium borderline
Rsat03G0030090 Alkaloid T3O medium borderline
Rsat03G0030110 Alkaloid T3O medium borderline
Rsat04G0000420 Alkaloid T3O medium borderline
Rsat04G0000640 Alkaloid T3O medium pass
Rsat04G0000650 Alkaloid T3O medium pass
Rsat04G0001210 Alkaloid T3O medium borderline
Rsat04G0001230 Alkaloid T3O medium borderline
Rsat04G0001760 Alkaloid T3O medium pass
Rsat04G0001820 Alkaloid T3O medium borderline
Rsat04G0010590 Alkaloid T3O medium pass
Rsat04G0011320 Alkaloid T3O medium borderline
Rsat04G0012790 Alkaloid T3O medium borderline
Rsat04G0012870 Alkaloid T3O medium pass
Rsat04G0015200 Alkaloid T3O medium pass
Rsat04G0016690 Alkaloid T3O medium borderline
Rsat04G0019970 Alkaloid T3O medium pass
Rsat04G0022280 Alkaloid T3O medium borderline
Rsat04G0022290 Alkaloid T3O medium borderline
Rsat04G0022350 Alkaloid T3O medium borderline
Rsat04G0022370 Alkaloid T3O medium borderline
Rsat04G0022380 Alkaloid T3O medium borderline