PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Rsat04G0022390 Alkaloid T3O medium borderline
Rsat04G0027420 Alkaloid T3O medium borderline
Rsat04G0027480 Alkaloid T3O medium borderline
Rsat04G0037740 Alkaloid T3O medium pass
Rsat04G0039110 Alkaloid T3O medium pass
Rsat04G0051970 Alkaloid T3O medium borderline
Rsat04G0053940 Alkaloid T3O medium borderline
Rsat04G0053950 Alkaloid T3O medium borderline
Rsat04G0053960 Alkaloid T3O medium borderline
Rsat04G0053970 Alkaloid T3O medium borderline
Rsat04G0055930 Alkaloid T3O medium borderline
Rsat04G0061140 Alkaloid T3O medium borderline
Rsat04G0061160 Alkaloid T3O medium borderline
Rsat05G0007570 Alkaloid T3O low borderline
Rsat05G0009810 Alkaloid T3O medium borderline
Rsat05G0011580 Alkaloid T3O low borderline
Rsat05G0013750 Alkaloid T3O medium borderline
Rsat05G0013890 Alkaloid T3O medium borderline
Rsat05G0016010 Alkaloid T3O medium pass
Rsat05G0023580 Alkaloid T3O medium pass
Rsat05G0027170 Alkaloid T3O medium borderline
Rsat05G0033340 Alkaloid T3O low borderline
Rsat05G0043560 Alkaloid T3O medium borderline
Rsat05G0043600 Alkaloid T3O medium borderline
Rsat05G0044300 Alkaloid T3O medium pass
Rsat05G0048670 Alkaloid T3O medium pass
Rsat05G0051740 Alkaloid T3O medium borderline
Rsat05G0057590 Alkaloid T3O low borderline
Rsat06G0026480 Alkaloid T3O medium pass
Rsat06G0031600 Alkaloid T3O medium borderline
Rsat06G0031760 Alkaloid T3O medium pass
Rsat07G0001050 Alkaloid T3O medium borderline
Rsat07G0019080 Alkaloid T3O medium borderline
Rsat07G0022310 Alkaloid T3O medium borderline
Rsat07G0022320 Alkaloid T3O medium borderline
Rsat07G0023780 Alkaloid T3O medium borderline
Rsat07G0025360 Alkaloid T3O medium borderline
Rsat07G0025370 Alkaloid T3O medium borderline
Rsat07G0027190 Alkaloid T3O medium pass
Rsat07G0031080 Alkaloid T3O medium borderline
Rsat08G0008180 Alkaloid T3O medium pass
Rsat08G0010650 Alkaloid T3O medium borderline
Rsat08G0013210 Alkaloid T3O medium borderline
Rsat08G0015350 Alkaloid T3O medium borderline
Rsat08G0019170 Alkaloid T3O medium borderline
Rsat08G0019210 Alkaloid T3O medium borderline
Rsat08G0020000 Alkaloid T3O medium pass
Rsat08G0025320 Alkaloid T3O medium pass
Rsat08G0027770 Alkaloid T3O medium borderline
Rsat08G0027780 Alkaloid T3O medium borderline