PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Rsat08G0027790 Alkaloid T3O medium borderline
Rsat09G0001760 Alkaloid T3O low borderline
Rsat09G0002610 Alkaloid T3O medium borderline
Rsat09G0005720 Alkaloid T3O medium pass
Rsat09G0008100 Alkaloid T3O medium borderline
Rsat09G0008110 Alkaloid T3O medium borderline
Rsat09G0008140 Alkaloid T3O medium borderline
Rsat09G0009070 Alkaloid T3O medium pass
Rsat09G0011150 Alkaloid T3O medium borderline
Rsat09G0015720 Alkaloid T3O medium pass
Rsat09G0016820 Alkaloid T3O medium borderline
Rsat09G0018610 Alkaloid T3O low borderline
Rsat09G0027080 Alkaloid T3O medium borderline
Rsat09G0030960 Alkaloid T3O medium borderline
Rsat09G0035160 Alkaloid T3O medium pass
RsatScaffold16820003570 Alkaloid T3O medium pass
RsatScaffold24290006070 Alkaloid T3O low borderline
RsatScaffold24510006150 Alkaloid T3O medium borderline
RsatScaffold26530007730 Alkaloid T3O medium borderline
RsatScaffold38170012430 Alkaloid T3O medium borderline
RsatScaffold46150014290 Alkaloid T3O medium borderline
RsatScaffold5350015410 Alkaloid T3O medium borderline
RsatScaffold5350015420 Alkaloid T3O medium borderline
Rsat05G0019690 Alkaloid TDC low borderline
Rsat08G0022090 Alkaloid TDC low borderline
Rsat09G0003830 Alkaloid TDC low borderline
Rsat01G0000580 Alkaloid TRI/TRII medium pass
Rsat01G0012810 Alkaloid TRI/TRII medium pass
Rsat01G0012860 Alkaloid TRI/TRII medium pass
Rsat01G0012870 Alkaloid TRI/TRII medium pass
Rsat01G0012880 Alkaloid TRI/TRII medium pass
Rsat01G0012890 Alkaloid TRI/TRII medium pass
Rsat01G0017620 Alkaloid TRI/TRII medium pass
Rsat01G0018600 Alkaloid TRI/TRII medium pass
Rsat01G0023870 Alkaloid TRI/TRII medium pass
Rsat01G0025490 Alkaloid TRI/TRII medium pass
Rsat01G0034780 Alkaloid TRI/TRII low borderline
Rsat01G0039640 Alkaloid TRI/TRII low borderline
Rsat01G0043130 Alkaloid TRI/TRII medium pass
Rsat01G0043140 Alkaloid TRI/TRII medium pass
Rsat01G0050690 Alkaloid TRI/TRII low borderline
Rsat01G0053090 Alkaloid TRI/TRII medium pass
Rsat02G0024560 Alkaloid TRI/TRII medium pass
Rsat02G0041990 Alkaloid TRI/TRII medium pass
Rsat03G0024440 Alkaloid TRI/TRII medium pass
Rsat03G0024970 Alkaloid TRI/TRII medium pass
Rsat03G0024980 Alkaloid TRI/TRII medium pass
Rsat03G0024990 Alkaloid TRI/TRII medium pass
Rsat04G0013270 Alkaloid TRI/TRII medium pass
Rsat04G0021980 Alkaloid TRI/TRII medium pass