PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Rsat04G0043280 Alkaloid TRI/TRII medium pass
Rsat04G0043290 Alkaloid TRI/TRII medium pass
Rsat04G0043300 Alkaloid TRI/TRII medium pass
Rsat04G0043320 Alkaloid TRI/TRII medium pass
Rsat04G0043340 Alkaloid TRI/TRII medium pass
Rsat04G0043350 Alkaloid TRI/TRII medium pass
Rsat04G0043370 Alkaloid TRI/TRII medium pass
Rsat04G0043380 Alkaloid TRI/TRII medium pass
Rsat04G0061050 Alkaloid TRI/TRII medium pass
Rsat05G0004910 Alkaloid TRI/TRII medium pass
Rsat05G0014030 Alkaloid TRI/TRII low borderline
Rsat05G0030380 Alkaloid TRI/TRII medium pass
Rsat05G0037480 Alkaloid TRI/TRII low borderline
Rsat05G0049330 Alkaloid TRI/TRII low borderline
Rsat05G0052560 Alkaloid TRI/TRII medium pass
Rsat05G0054790 Alkaloid TRI/TRII low borderline
Rsat05G0055870 Alkaloid TRI/TRII medium pass
Rsat05G0056300 Alkaloid TRI/TRII low borderline
Rsat06G0001990 Alkaloid TRI/TRII medium pass
Rsat06G0004530 Alkaloid TRI/TRII medium borderline
Rsat06G0013830 Alkaloid TRI/TRII medium pass
Rsat06G0027880 Alkaloid TRI/TRII medium pass
Rsat07G0031770 Alkaloid TRI/TRII low borderline
Rsat08G0003170 Alkaloid TRI/TRII medium borderline
Rsat08G0030700 Alkaloid TRI/TRII medium pass
Rsat08G0030710 Alkaloid TRI/TRII medium pass
Rsat08G0032850 Alkaloid TRI/TRII medium pass
Rsat09G0004000 Alkaloid TRI/TRII medium pass
Rsat09G0020810 Alkaloid TRI/TRII medium pass
Rsat09G0022500 Alkaloid TRI/TRII medium pass
Rsat09G0024020 Alkaloid TRI/TRII medium pass
Rsat09G0024820 Alkaloid TRI/TRII low borderline
RsatScaffold15930003130 Alkaloid TRI/TRII medium pass
Rsat01G0015850 Alkaloid TYDC_DDC medium borderline
Rsat01G0037140 Alkaloid TYDC_DDC medium borderline
Rsat01G0037150 Alkaloid TYDC_DDC medium borderline
Rsat02G0008120 Alkaloid TYDC_DDC medium borderline
Rsat09G0015930 Alkaloid TYDC_DDC medium borderline
Rsat01G0039650 Alkaloid XMT_MXMT_DXMT low borderline
Rsat03G0014250 Alkaloid XMT_MXMT_DXMT medium borderline
Rsat07G0031020 Alkaloid XMT_MXMT_DXMT medium borderline
Rsat01G0000460 Flavonoid 4CL low borderline
Rsat01G0000470 Flavonoid 4CL low borderline
Rsat01G0021880 Flavonoid 4CL medium pass
Rsat01G0029690 Flavonoid 4CL medium pass
Rsat01G0029700 Flavonoid 4CL medium pass
Rsat01G0034480 Flavonoid 4CL medium pass
Rsat01G0048920 Flavonoid 4CL medium pass
Rsat01G0057900 Flavonoid 4CL low borderline
Rsat02G0012070 Flavonoid 4CL low borderline