PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Rsat02G0015760 Flavonoid 4CL medium pass
Rsat02G0037640 Flavonoid 4CL low borderline
Rsat02G0039980 Flavonoid 4CL low borderline
Rsat02G0043750 Flavonoid 4CL medium pass
Rsat02G0049300 Flavonoid 4CL medium pass
Rsat02G0050010 Flavonoid 4CL medium pass
Rsat03G0006460 Flavonoid 4CL medium pass
Rsat03G0029860 Flavonoid 4CL medium pass
Rsat04G0017930 Flavonoid 4CL low borderline
Rsat04G0038180 Flavonoid 4CL low borderline
Rsat04G0055180 Flavonoid 4CL low borderline
Rsat04G0056150 Flavonoid 4CL low borderline
Rsat05G0001970 Flavonoid 4CL low borderline
Rsat05G0008360 Flavonoid 4CL medium pass
Rsat05G0008370 Flavonoid 4CL medium pass
Rsat05G0009180 Flavonoid 4CL low borderline
Rsat05G0009950 Flavonoid 4CL low borderline
Rsat05G0011320 Flavonoid 4CL low borderline
Rsat05G0018140 Flavonoid 4CL medium pass
Rsat05G0018930 Flavonoid 4CL low borderline
Rsat05G0042570 Flavonoid 4CL medium pass
Rsat05G0042580 Flavonoid 4CL medium pass
Rsat05G0042600 Flavonoid 4CL medium pass
Rsat05G0046260 Flavonoid 4CL medium pass
Rsat05G0054340 Flavonoid 4CL low borderline
Rsat06G0004630 Flavonoid 4CL medium pass
Rsat06G0011690 Flavonoid 4CL low borderline
Rsat06G0017420 Flavonoid 4CL medium pass
Rsat06G0018180 Flavonoid 4CL medium pass
Rsat06G0018230 Flavonoid 4CL medium pass
Rsat06G0018240 Flavonoid 4CL medium pass
Rsat07G0010330 Flavonoid 4CL low borderline
Rsat07G0015050 Flavonoid 4CL medium pass
Rsat07G0015260 Flavonoid 4CL medium pass
Rsat08G0024950 Flavonoid 4CL medium pass
Rsat08G0024960 Flavonoid 4CL medium pass
Rsat08G0024970 Flavonoid 4CL medium pass
Rsat09G0014620 Flavonoid 4CL low borderline
Rsat09G0015550 Flavonoid 4CL medium pass
Rsat09G0021420 Flavonoid 4CL medium pass
Rsat09G0021430 Flavonoid 4CL medium pass
Rsat09G0021450 Flavonoid 4CL medium pass
Rsat09G0039410 Flavonoid 4CL medium pass
Rsat09G0042370 Flavonoid 4CL low borderline
RsatScaffold30690009200 Flavonoid 4CL medium pass
Rsat01G0002070 Flavonoid ANR medium borderline
Rsat01G0024940 Flavonoid ANR medium borderline
Rsat02G0003120 Flavonoid ANR medium borderline
Rsat02G0020910 Flavonoid ANR low borderline
Rsat02G0045300 Flavonoid ANR medium borderline