PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
Reset
Gene Pathway Family Confidence Status
Rsat04G0000420 Flavonoid F3'5'H/CYP75A medium borderline
Rsat04G0012830 Flavonoid F3'5'H/CYP75A low borderline
Rsat04G0060710 Flavonoid F3'5'H/CYP75A medium borderline
Rsat05G0009820 Flavonoid F3'5'H/CYP75A medium borderline
Rsat05G0016220 Flavonoid F3'5'H/CYP75A medium borderline
Rsat07G0021810 Flavonoid F3'5'H/CYP75A medium borderline
Rsat07G0027190 Flavonoid F3'5'H/CYP75A medium borderline
Rsat07G0030810 Flavonoid F3'5'H/CYP75A medium borderline
Rsat08G0009530 Flavonoid F3'5'H/CYP75A low borderline
Rsat08G0010710 Flavonoid F3'5'H/CYP75A medium borderline
Rsat08G0028510 Flavonoid F3'5'H/CYP75A medium borderline
Rsat09G0003600 Flavonoid F3'5'H/CYP75A medium borderline
Rsat09G0003610 Flavonoid F3'5'H/CYP75A medium borderline
Rsat09G0008110 Flavonoid F3'5'H/CYP75A medium borderline
Rsat01G0009190 Flavonoid F3'H/CYP75B medium borderline
Rsat01G0015230 Flavonoid F3'H/CYP75B medium borderline
Rsat01G0017700 Flavonoid F3'H/CYP75B medium borderline
Rsat01G0021390 Flavonoid F3'H/CYP75B medium borderline
Rsat01G0026670 Flavonoid F3'H/CYP75B medium borderline
Rsat01G0026680 Flavonoid F3'H/CYP75B medium borderline
Rsat01G0042580 Flavonoid F3'H/CYP75B medium borderline
Rsat01G0042840 Flavonoid F3'H/CYP75B medium borderline
Rsat01G0042860 Flavonoid F3'H/CYP75B medium borderline
Rsat01G0042880 Flavonoid F3'H/CYP75B medium borderline
Rsat01G0042890 Flavonoid F3'H/CYP75B medium borderline
Rsat01G0042910 Flavonoid F3'H/CYP75B medium borderline
Rsat01G0044010 Flavonoid F3'H/CYP75B medium borderline
Rsat01G0045170 Flavonoid F3'H/CYP75B medium borderline
Rsat01G0046970 Flavonoid F3'H/CYP75B medium borderline
Rsat01G0051470 Flavonoid F3'H/CYP75B medium borderline
Rsat01G0051480 Flavonoid F3'H/CYP75B medium borderline
Rsat01G0053000 Flavonoid F3'H/CYP75B medium borderline
Rsat01G0053020 Flavonoid F3'H/CYP75B medium borderline
Rsat01G0053250 Flavonoid F3'H/CYP75B medium borderline
Rsat01G0058830 Flavonoid F3'H/CYP75B low borderline
Rsat02G0000730 Flavonoid F3'H/CYP75B low borderline
Rsat02G0001090 Flavonoid F3'H/CYP75B medium borderline
Rsat02G0001750 Flavonoid F3'H/CYP75B medium borderline
Rsat02G0006130 Flavonoid F3'H/CYP75B medium borderline
Rsat02G0013010 Flavonoid F3'H/CYP75B medium borderline
Rsat02G0026670 Flavonoid F3'H/CYP75B low borderline
Rsat02G0029480 Flavonoid F3'H/CYP75B medium borderline
Rsat02G0036240 Flavonoid F3'H/CYP75B medium borderline
Rsat02G0036670 Flavonoid F3'H/CYP75B medium borderline
Rsat02G0042540 Flavonoid F3'H/CYP75B low borderline
Rsat03G0011260 Flavonoid F3'H/CYP75B medium borderline
Rsat03G0013810 Flavonoid F3'H/CYP75B low borderline
Rsat03G0015310 Flavonoid F3'H/CYP75B medium borderline
Rsat03G0019520 Flavonoid F3'H/CYP75B medium borderline
Rsat04G0000610 Flavonoid F3'H/CYP75B low borderline