PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

2318
Candidate Protein Records
1922
Pathway-Level Records
4722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Rsat09G0008140 Steroid DWF4/CYP90B1 low borderline
Rsat09G0009070 Steroid DWF4/CYP90B1 medium borderline
Rsat09G0011150 Steroid DWF4/CYP90B1 low borderline
Rsat09G0015720 Steroid DWF4/CYP90B1 low borderline
Rsat09G0016820 Steroid DWF4/CYP90B1 low borderline
Rsat09G0025380 Steroid DWF4/CYP90B1 medium borderline
Rsat09G0027080 Steroid DWF4/CYP90B1 low borderline
Rsat09G0032320 Steroid DWF4/CYP90B1 low borderline
Rsat09G0038210 Steroid DWF4/CYP90B1 low borderline
RsatScaffold16820003570 Steroid DWF4/CYP90B1 low borderline
RsatScaffold24290006070 Steroid DWF4/CYP90B1 medium borderline
RsatScaffold2600007120 Steroid DWF4/CYP90B1 low borderline
RsatScaffold29490008690 Steroid DWF4/CYP90B1 low borderline
RsatScaffold5350015420 Steroid DWF4/CYP90B1 low borderline
Rsat05G0018670 Steroid DWF5 medium borderline
Rsat08G0002870 Steroid DWF5 medium borderline
Rsat05G0000700 Steroid DWF7 medium pass
Rsat05G0000710 Steroid DWF7 medium pass
Rsat09G0022090 Steroid DWF7 low borderline
Rsat04G0057160 Steroid FK high pass
Rsat01G0029960 Steroid HYD1 high pass
Rsat05G0023500 Steroid HYD1 low borderline
Rsat08G0023010 Steroid HYD1 low borderline
Rsat01G0010780 Steroid ROT3/CYP90C1 medium borderline
Rsat01G0023030 Steroid ROT3/CYP90C1 medium borderline
Rsat02G0002470 Steroid ROT3/CYP90C1 medium borderline
Rsat04G0001760 Steroid ROT3/CYP90C1 medium borderline
Rsat04G0034670 Steroid ROT3/CYP90C1 low borderline
Rsat04G0053930 Steroid ROT3/CYP90C1 medium borderline
Rsat06G0010680 Steroid ROT3/CYP90C1 low borderline
Rsat09G0035160 Steroid ROT3/CYP90C1 medium borderline
Rsat02G0012950 Steroid SMO1/SMO2 medium pass
Rsat02G0041580 Steroid SMO1/SMO2 medium pass
Rsat04G0043390 Steroid SMO1/SMO2 medium pass
Rsat05G0030420 Steroid SMO1/SMO2 medium pass
Rsat06G0027900 Steroid SMO1/SMO2 medium pass
Rsat08G0030730 Steroid SMO1/SMO2 medium pass
Rsat01G0010020 Steroid SMT1/SMT2/SMT3 medium pass
Rsat01G0015250 Steroid SMT1/SMT2/SMT3 medium pass
Rsat01G0015260 Steroid SMT1/SMT2/SMT3 medium pass
Rsat01G0015270 Steroid SMT1/SMT2/SMT3 medium pass
Rsat01G0017360 Steroid SMT1/SMT2/SMT3 medium pass
Rsat01G0019670 Steroid SMT1/SMT2/SMT3 low borderline
Rsat01G0025450 Steroid SMT1/SMT2/SMT3 low borderline
Rsat01G0029630 Steroid SMT1/SMT2/SMT3 medium pass
Rsat01G0041980 Steroid SMT1/SMT2/SMT3 medium pass
Rsat01G0052190 Steroid SMT1/SMT2/SMT3 medium pass
Rsat01G0057110 Steroid SMT1/SMT2/SMT3 low borderline
Rsat01G0060330 Steroid SMT1/SMT2/SMT3 medium pass
Rsat01G0060340 Steroid SMT1/SMT2/SMT3 medium pass