Trifolium medium (trifolium_medium)
Imported from atlas release summary for Trifolium medium.
1815
Candidate Protein Records
1627
Pathway-Level Records
3129
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3129
Family-Level Calls
UGT
5.88%
BAHD
5.5%
4CL
5.47%
C4H
5.08%
POD
4.92%
C3'H/CYP98A
4.19%
NMT
3.61%
IFS
3.42%
Other Families
61.94%
More Families (92)
7DLGT
94
3.0%
CYP76
88
2.81%
UFGT
80
2.56%
F3H
74
2.36%
PAL
63
2.01%
STR
62
1.98%
T3O
57
1.82%
H6H
51
1.63%
F3'H/CYP75B
50
1.6%
CAS
50
1.6%
CODM/T6ODM
49
1.57%
T16H
45
1.44%
BR6OX2/CYP85A2
45
1.44%
CAD
42
1.34%
PYKS
38
1.21%
DWF4/CYP90B1
38
1.21%
CSE
36
1.15%
GS
33
1.05%
CHS
33
1.05%
COMT
32
1.02%
G8O/G8H
30
0.96%
SGD
28
0.89%
IFR
28
0.89%
LAC
28
0.89%
CYP51G1
27
0.86%
SMT1/SMT2/SMT3
26
0.83%
CYP71
26
0.83%
ANS/LDOX
25
0.8%
CYP90D1
24
0.77%
7DLH
23
0.74%
TRI/TRII
22
0.7%
TPS
22
0.7%
16OMT
21
0.67%
DFR
21
0.67%
BBE
20
0.64%
IO
20
0.64%
FNS
20
0.64%
BR6OX1/CYP85A1
20
0.64%
F3'5'H/CYP75A
19
0.61%
CCR
19
0.61%
HCT
18
0.58%
CCoAOMT
17
0.54%
CPD/CYP90A1
17
0.54%
DXS
17
0.54%
NCS
15
0.48%
MPO
15
0.48%
ANR
15
0.48%
GES
14
0.45%
COR
14
0.45%
8HGO
13
0.42%
ISY
13
0.42%
TAT
13
0.42%
HMGR
13
0.42%
F5H/CYP84A
12
0.38%
CYP80B1
11
0.35%
RAS
11
0.35%
CPR
11
0.35%
ROT3/CYP90C1
11
0.35%
DXR
11
0.35%
SLS
10
0.32%
FLS
10
0.32%
AACT
10
0.32%
SQE
9
0.29%
FPPS
9
0.29%
PMT
8
0.26%
CYP719
7
0.22%
HPPR
7
0.22%
LAMT
6
0.19%
CHI
6
0.19%
DWF1
6
0.19%
HMGS
6
0.19%
HDS/IspG
6
0.19%
GGPPS
5
0.16%
CNMT
4
0.13%
IDI
4
0.13%
MVK
4
0.13%
ODC
3
0.1%
SMO1/SMO2
3
0.1%
SQS/FDFT1
3
0.1%
CMK/IspE
3
0.1%
XMT_MXMT_DXMT
2
0.06%
TDC
2
0.06%
ADC
2
0.06%
DWF7
2
0.06%
HYD1
2
0.06%
MVD
2
0.06%
GPPS
2
0.06%
6OMT_4OMT_SOMT
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
DWF5
1
0.03%
MCT/IspD
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 461 | 17 | UGT (175) | View species results |
| Phenylpropanoid pathway | 363 | 12 | POD (147) | View species results |
| Alkaloid pathway | 359 | 22 | NMT (90) | View species results |
| Flavonoid pathway | 207 | 14 | UFGT (52) | View species results |
| Rosmarinic acid pathway | 142 | 7 | 4CL (51) | View species results |
| Steroid pathway | 95 | 10 | CAS (48) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 977 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 201 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| MCI29357.1[Trifolium | Rosmarinic Acid | C4H | medium | pass |
| MCI29677.1[Trifolium | Rosmarinic Acid | C4H | medium | pass |
| MCI29991.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |
| MCI30067.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |
| MCI30171.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |
| MCI30787.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |
| MCI30875.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |
| MCI31313.1[Trifolium | Rosmarinic Acid | C4H | medium | pass |
| MCI33410.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |
| MCI34127.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |
| MCI34692.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |
| MCI36247.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |
| MCI36636.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |
| MCI36764.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |
| MCI37579.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |
| MCI41438.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |
| MCI43793.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |
| MCI46382.1[Trifolium | Rosmarinic Acid | C4H | medium | pass |
| MCI47105.1[Trifolium | Rosmarinic Acid | C4H | medium | pass |
| MCI50644.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |
| MCI53444.1[Trifolium | Rosmarinic Acid | C4H | medium | pass |
| MCI55851.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |
| MCI56004.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |
| MCI57189.1[Trifolium | Rosmarinic Acid | C4H | medium | pass |
| MCI57977.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |
| MCI69400.1[Trifolium | Rosmarinic Acid | C4H | medium | pass |
| MCI72952.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |
| MCI73280.1[Trifolium | Rosmarinic Acid | C4H | medium | pass |
| MCI73595.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |
| MCI97498.1[Trifolium | Rosmarinic Acid | C4H | low | borderline |