PlantSME Plant secondary metabolism enzyme database

Trifolium medium (trifolium_medium)

Imported from atlas release summary for Trifolium medium.

1627
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (92)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 17 UGT (175) View species results
Phenylpropanoid pathway 363 12 POD (147) View species results
Alkaloid pathway 359 22 NMT (90) View species results
Flavonoid pathway 207 14 UFGT (52) View species results
Rosmarinic acid pathway 142 7 4CL (51) View species results
Steroid pathway 95 10 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 201 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
MCI17878.1[Trifolium Flavonoid F3H low borderline
MCI19067.1[Trifolium Flavonoid F3H medium borderline
MCI19134.1[Trifolium Flavonoid F3H low borderline
MCI19553.1[Trifolium Flavonoid F3H medium borderline
MCI20343.1[Trifolium Flavonoid F3H medium borderline
MCI20409.1[Trifolium Flavonoid F3H medium borderline
MCI22565.1[Trifolium Flavonoid F3H medium pass
MCI22853.1[Trifolium Flavonoid F3H low borderline
MCI23479.1[Trifolium Flavonoid F3H medium pass
MCI26819.1[Trifolium Flavonoid F3H low borderline
MCI31622.1[Trifolium Flavonoid F3H low borderline
MCI36065.1[Trifolium Flavonoid F3H medium borderline
MCI38152.1[Trifolium Flavonoid F3H medium pass
MCI39158.1[Trifolium Flavonoid F3H medium borderline
MCI39605.1[Trifolium Flavonoid F3H medium borderline
MCI39764.1[Trifolium Flavonoid F3H medium pass
MCI43067.1[Trifolium Flavonoid F3H medium borderline
MCI45916.1[Trifolium Flavonoid F3H medium borderline
MCI61099.1[Trifolium Flavonoid F3H medium borderline
MCI62361.1[Trifolium Flavonoid F3H medium borderline
MCI87432.1[Trifolium Flavonoid F3H low borderline
MCI88231.1[Trifolium Flavonoid F3H medium borderline
MCI94910.1[Trifolium Flavonoid F3H medium borderline
MCI96375.1[Trifolium Flavonoid F3H medium borderline