PlantSME Plant secondary metabolism enzyme database

Trifolium medium (trifolium_medium)

Imported from atlas release summary for Trifolium medium.

1627
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (92)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 17 UGT (175) View species results
Phenylpropanoid pathway 363 12 POD (147) View species results
Alkaloid pathway 359 22 NMT (90) View species results
Flavonoid pathway 207 14 UFGT (52) View species results
Rosmarinic acid pathway 142 7 4CL (51) View species results
Steroid pathway 95 10 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 201 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
MCI47307.1[Trifolium Flavonoid 4CL medium pass
MCI64455.1[Trifolium Flavonoid 4CL medium pass
MCI65852.1[Trifolium Flavonoid 4CL medium pass
MCI71671.1[Trifolium Flavonoid 4CL medium pass
MCI83047.1[Trifolium Flavonoid 4CL medium pass
MCI84646.1[Trifolium Flavonoid 4CL medium pass
MCI95869.1[Trifolium Flavonoid 4CL medium pass
MCH80151.1[Trifolium Flavonoid ANR medium borderline
MCH85921.1[Trifolium Flavonoid ANR medium pass
MCH96073.1[Trifolium Flavonoid ANR medium borderline
MCI05903.1[Trifolium Flavonoid ANR low borderline
MCI06903.1[Trifolium Flavonoid ANR medium borderline
MCI06945.1[Trifolium Flavonoid ANR medium borderline
MCI07047.1[Trifolium Flavonoid ANR low borderline
MCI07450.1[Trifolium Flavonoid ANR medium borderline
MCI07683.1[Trifolium Flavonoid ANR medium borderline
MCI08331.1[Trifolium Flavonoid ANR medium borderline
MCI10921.1[Trifolium Flavonoid ANR medium borderline
MCI20182.1[Trifolium Flavonoid ANR medium borderline
MCI21451.1[Trifolium Flavonoid ANR medium borderline
MCI27978.1[Trifolium Flavonoid ANR medium borderline
MCI37051.1[Trifolium Flavonoid ANR low borderline
MCH80716.1[Trifolium Flavonoid ANS/LDOX low borderline
MCH82166.1[Trifolium Flavonoid ANS/LDOX medium pass
MCH84491.1[Trifolium Flavonoid ANS/LDOX medium borderline
MCH90235.1[Trifolium Flavonoid ANS/LDOX medium borderline
MCH91176.1[Trifolium Flavonoid ANS/LDOX medium borderline
MCH96302.1[Trifolium Flavonoid ANS/LDOX medium borderline
MCH98881.1[Trifolium Flavonoid ANS/LDOX medium pass
MCI01793.1[Trifolium Flavonoid ANS/LDOX medium pass
MCI04511.1[Trifolium Flavonoid ANS/LDOX low borderline
MCI06405.1[Trifolium Flavonoid ANS/LDOX medium borderline
MCI07375.1[Trifolium Flavonoid ANS/LDOX medium pass
MCI10397.1[Trifolium Flavonoid ANS/LDOX medium pass
MCI13206.1[Trifolium Flavonoid ANS/LDOX medium pass
MCI14600.1[Trifolium Flavonoid ANS/LDOX medium borderline
MCI15023.1[Trifolium Flavonoid ANS/LDOX medium borderline
MCI15724.1[Trifolium Flavonoid ANS/LDOX medium pass
MCI16482.1[Trifolium Flavonoid ANS/LDOX medium borderline
MCI20645.1[Trifolium Flavonoid ANS/LDOX medium pass
MCI23499.1[Trifolium Flavonoid ANS/LDOX medium pass
MCI23601.1[Trifolium Flavonoid ANS/LDOX medium borderline
MCI25544.1[Trifolium Flavonoid ANS/LDOX medium pass
MCI40634.1[Trifolium Flavonoid ANS/LDOX medium borderline
MCI47079.1[Trifolium Flavonoid ANS/LDOX low borderline
MCI57668.1[Trifolium Flavonoid ANS/LDOX low borderline
MCI76553.1[Trifolium Flavonoid ANS/LDOX medium pass
MCH94488.1[Trifolium Flavonoid C4H medium borderline
MCH98749.1[Trifolium Flavonoid C4H low borderline
MCI01502.1[Trifolium Flavonoid C4H medium pass