PlantSME Plant secondary metabolism enzyme database

Trifolium medium (trifolium_medium)

Imported from atlas release summary for Trifolium medium.

1627
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (92)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 17 UGT (175) View species results
Phenylpropanoid pathway 363 12 POD (147) View species results
Alkaloid pathway 359 22 NMT (90) View species results
Flavonoid pathway 207 14 UFGT (52) View species results
Rosmarinic acid pathway 142 7 4CL (51) View species results
Steroid pathway 95 10 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 201 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
MCI33699.1[Trifolium Alkaloid 7DLGT low borderline
MCI34649.1[Trifolium Alkaloid 7DLGT low borderline
MCI36789.1[Trifolium Alkaloid 7DLGT low borderline
MCI38252.1[Trifolium Alkaloid 7DLGT medium pass
MCI39286.1[Trifolium Alkaloid 7DLGT medium pass
MCI41131.1[Trifolium Alkaloid 7DLGT low borderline
MCI41189.1[Trifolium Alkaloid 7DLGT low borderline
MCI60284.1[Trifolium Alkaloid 7DLGT low borderline
MCI66216.1[Trifolium Alkaloid 7DLGT low borderline
MCI68776.1[Trifolium Alkaloid 7DLGT medium pass
MCI69610.1[Trifolium Alkaloid 7DLGT low borderline
MCI69830.1[Trifolium Alkaloid 7DLGT low borderline
MCI75236.1[Trifolium Alkaloid 7DLGT medium pass
MCI76607.1[Trifolium Alkaloid 7DLGT medium pass
MCI84501.1[Trifolium Alkaloid 7DLGT medium pass
MCI89918.1[Trifolium Alkaloid 7DLGT low borderline
MCH80724.1[Trifolium Alkaloid 7DLH medium borderline
MCH84617.1[Trifolium Alkaloid 7DLH medium borderline
MCH87066.1[Trifolium Alkaloid 7DLH medium borderline
MCH90744.1[Trifolium Alkaloid 7DLH low borderline
MCH91394.1[Trifolium Alkaloid 7DLH medium borderline
MCH97726.1[Trifolium Alkaloid 7DLH low borderline
MCH99299.1[Trifolium Alkaloid 7DLH low borderline
MCH99411.1[Trifolium Alkaloid 7DLH low borderline
MCI00394.1[Trifolium Alkaloid 7DLH medium borderline
MCI03645.1[Trifolium Alkaloid 7DLH medium borderline
MCI04406.1[Trifolium Alkaloid 7DLH medium borderline
MCI06229.1[Trifolium Alkaloid 7DLH medium borderline
MCI07783.1[Trifolium Alkaloid 7DLH medium borderline
MCI14453.1[Trifolium Alkaloid 7DLH low borderline
MCI14769.1[Trifolium Alkaloid 7DLH low borderline
MCI16152.1[Trifolium Alkaloid 7DLH medium borderline
MCI16495.1[Trifolium Alkaloid 7DLH low borderline
MCI16927.1[Trifolium Alkaloid 7DLH low borderline
MCI24634.1[Trifolium Alkaloid 7DLH medium borderline
MCI27510.1[Trifolium Alkaloid 7DLH medium borderline
MCI27590.1[Trifolium Alkaloid 7DLH medium borderline
MCI40882.1[Trifolium Alkaloid 7DLH low borderline
MCI44011.1[Trifolium Alkaloid 7DLH low borderline
MCH95287.1[Trifolium Alkaloid 8HGO low borderline
MCH95375.1[Trifolium Alkaloid 8HGO medium pass
MCI03313.1[Trifolium Alkaloid 8HGO medium borderline
MCI06026.1[Trifolium Alkaloid 8HGO low borderline
MCI06381.1[Trifolium Alkaloid 8HGO medium pass
MCI22426.1[Trifolium Alkaloid 8HGO medium pass
MCI24114.1[Trifolium Alkaloid 8HGO medium pass
MCI26588.1[Trifolium Alkaloid 8HGO low borderline
MCI28991.1[Trifolium Alkaloid 8HGO low borderline
MCI34063.1[Trifolium Alkaloid 8HGO medium pass
MCI35153.1[Trifolium Alkaloid 8HGO medium pass