PlantSME Plant secondary metabolism enzyme database

Trifolium medium (trifolium_medium)

Imported from atlas release summary for Trifolium medium.

1627
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (92)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 17 UGT (175) View species results
Phenylpropanoid pathway 363 12 POD (147) View species results
Alkaloid pathway 359 22 NMT (90) View species results
Flavonoid pathway 207 14 UFGT (52) View species results
Rosmarinic acid pathway 142 7 4CL (51) View species results
Steroid pathway 95 10 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 201 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
MCI71173.1[Trifolium Alkaloid 8HGO medium borderline
MCI80806.1[Trifolium Alkaloid 8HGO medium borderline
MCH91814.1[Trifolium Alkaloid ADC medium pass
MCI26114.1[Trifolium Alkaloid ADC medium pass
MCH82529.1[Trifolium Alkaloid BBE medium borderline
MCH85384.1[Trifolium Alkaloid BBE medium borderline
MCH85387.1[Trifolium Alkaloid BBE medium borderline
MCH90837.1[Trifolium Alkaloid BBE medium borderline
MCH93570.1[Trifolium Alkaloid BBE medium borderline
MCH94024.1[Trifolium Alkaloid BBE medium borderline
MCH94086.1[Trifolium Alkaloid BBE medium borderline
MCH95098.1[Trifolium Alkaloid BBE medium borderline
MCH98339.1[Trifolium Alkaloid BBE low borderline
MCI02920.1[Trifolium Alkaloid BBE medium borderline
MCI03058.1[Trifolium Alkaloid BBE medium borderline
MCI04853.1[Trifolium Alkaloid BBE medium borderline
MCI09782.1[Trifolium Alkaloid BBE medium borderline
MCI09796.1[Trifolium Alkaloid BBE medium borderline
MCI14015.1[Trifolium Alkaloid BBE medium borderline
MCI16079.1[Trifolium Alkaloid BBE medium borderline
MCI20853.1[Trifolium Alkaloid BBE medium borderline
MCI22997.1[Trifolium Alkaloid BBE medium borderline
MCI27625.1[Trifolium Alkaloid BBE medium borderline
MCI39760.1[Trifolium Alkaloid BBE medium borderline
MCH85068.1[Trifolium Alkaloid CNMT low borderline
MCH99277.1[Trifolium Alkaloid CNMT low borderline
MCI28821.1[Trifolium Alkaloid CNMT medium borderline
MCI97660.1[Trifolium Alkaloid CNMT low borderline
MCH80725.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCH84491.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCH88557.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCH89519.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCH91129.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCH91176.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCH93550.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCH94834.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCH95183.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCH96237.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCH96302.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCH96626.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCH96795.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCH96812.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCH98540.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCH98549.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCH99886.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCH99903.1[Trifolium Alkaloid CODM/T6ODM medium pass
MCI01235.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI01714.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI04118.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI04581.1[Trifolium Alkaloid CODM/T6ODM low borderline