PlantSME Plant secondary metabolism enzyme database

Trifolium medium (trifolium_medium)

Imported from atlas release summary for Trifolium medium.

1627
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (92)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 17 UGT (175) View species results
Phenylpropanoid pathway 363 12 POD (147) View species results
Alkaloid pathway 359 22 NMT (90) View species results
Flavonoid pathway 207 14 UFGT (52) View species results
Rosmarinic acid pathway 142 7 4CL (51) View species results
Steroid pathway 95 10 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 201 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
MCI04707.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI06594.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI06613.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI10168.1[Trifolium Alkaloid CODM/T6ODM medium pass
MCI10663.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI11079.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI11691.1[Trifolium Alkaloid CODM/T6ODM medium pass
MCI11716.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI12382.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI14600.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI15298.1[Trifolium Alkaloid CODM/T6ODM low borderline
MCI17769.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI18802.1[Trifolium Alkaloid CODM/T6ODM low borderline
MCI19553.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI20409.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI22853.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI23499.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI23601.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI23803.1[Trifolium Alkaloid CODM/T6ODM medium pass
MCI32439.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI36065.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI39158.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI39605.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI39764.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI40577.1[Trifolium Alkaloid CODM/T6ODM low borderline
MCI45916.1[Trifolium Alkaloid CODM/T6ODM medium borderline
MCI62361.1[Trifolium Alkaloid CODM/T6ODM low borderline
MCH93736.1[Trifolium Alkaloid COR medium pass
MCH98554.1[Trifolium Alkaloid COR medium pass
MCH99718.1[Trifolium Alkaloid COR medium pass
MCI11681.1[Trifolium Alkaloid COR medium pass
MCI13701.1[Trifolium Alkaloid COR medium pass
MCI17461.1[Trifolium Alkaloid COR medium pass
MCI21800.1[Trifolium Alkaloid COR medium pass
MCI30572.1[Trifolium Alkaloid COR medium pass
MCI33565.1[Trifolium Alkaloid COR medium pass
MCI36148.1[Trifolium Alkaloid COR medium pass
MCI37658.1[Trifolium Alkaloid COR medium pass
MCI48815.1[Trifolium Alkaloid COR medium pass
MCI49786.1[Trifolium Alkaloid COR medium pass
MCI95010.1[Trifolium Alkaloid COR medium pass
MCI08682.1[Trifolium Alkaloid CYP719 low borderline
MCI11111.1[Trifolium Alkaloid CYP719 low borderline
MCI12647.1[Trifolium Alkaloid CYP719 medium borderline
MCI18281.1[Trifolium Alkaloid CYP719 medium borderline
MCI22833.1[Trifolium Alkaloid CYP719 medium borderline
MCI33063.1[Trifolium Alkaloid CYP719 medium borderline
MCI41438.1[Trifolium Alkaloid CYP719 medium borderline
MCH84309.1[Trifolium Alkaloid CYP80B1 medium borderline
MCH95012.1[Trifolium Alkaloid CYP80B1 medium borderline