PlantSME Plant secondary metabolism enzyme database

Trifolium medium (trifolium_medium)

Imported from atlas release summary for Trifolium medium.

1627
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (92)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 17 UGT (175) View species results
Phenylpropanoid pathway 363 12 POD (147) View species results
Alkaloid pathway 359 22 NMT (90) View species results
Flavonoid pathway 207 14 UFGT (52) View species results
Rosmarinic acid pathway 142 7 4CL (51) View species results
Steroid pathway 95 10 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 201 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
MCH95578.1[Trifolium Alkaloid H6H low borderline
MCH95951.1[Trifolium Alkaloid H6H low borderline
MCH96378.1[Trifolium Alkaloid H6H low borderline
MCH96656.1[Trifolium Alkaloid H6H low borderline
MCH98881.1[Trifolium Alkaloid H6H low borderline
MCH99921.1[Trifolium Alkaloid H6H low borderline
MCI04806.1[Trifolium Alkaloid H6H low borderline
MCI06231.1[Trifolium Alkaloid H6H low borderline
MCI06396.1[Trifolium Alkaloid H6H low borderline
MCI06405.1[Trifolium Alkaloid H6H medium pass
MCI07005.1[Trifolium Alkaloid H6H medium borderline
MCI07166.1[Trifolium Alkaloid H6H medium pass
MCI07875.1[Trifolium Alkaloid H6H low borderline
MCI08811.1[Trifolium Alkaloid H6H low borderline
MCI09008.1[Trifolium Alkaloid H6H medium pass
MCI12199.1[Trifolium Alkaloid H6H low borderline
MCI12517.1[Trifolium Alkaloid H6H low borderline
MCI13048.1[Trifolium Alkaloid H6H low borderline
MCI15023.1[Trifolium Alkaloid H6H medium borderline
MCI16001.1[Trifolium Alkaloid H6H low borderline
MCI19067.1[Trifolium Alkaloid H6H low borderline
MCI19134.1[Trifolium Alkaloid H6H low borderline
MCI20343.1[Trifolium Alkaloid H6H low borderline
MCI22565.1[Trifolium Alkaloid H6H low borderline
MCI25544.1[Trifolium Alkaloid H6H medium pass
MCI29914.1[Trifolium Alkaloid H6H low borderline
MCI31622.1[Trifolium Alkaloid H6H low borderline
MCI38152.1[Trifolium Alkaloid H6H low borderline
MCI40634.1[Trifolium Alkaloid H6H low borderline
MCI43067.1[Trifolium Alkaloid H6H low borderline
MCI44227.1[Trifolium Alkaloid H6H low borderline
MCI47290.1[Trifolium Alkaloid H6H low borderline
MCI76553.1[Trifolium Alkaloid H6H low borderline
MCI81385.1[Trifolium Alkaloid H6H low borderline
MCI85624.1[Trifolium Alkaloid H6H low borderline
MCI87432.1[Trifolium Alkaloid H6H low borderline
MCI96375.1[Trifolium Alkaloid H6H low borderline
MCH88255.1[Trifolium Alkaloid IO medium borderline
MCH89289.1[Trifolium Alkaloid IO low borderline
MCH91894.1[Trifolium Alkaloid IO low borderline
MCH92442.1[Trifolium Alkaloid IO medium borderline
MCH94682.1[Trifolium Alkaloid IO low borderline
MCI03373.1[Trifolium Alkaloid IO low borderline
MCI12629.1[Trifolium Alkaloid IO medium borderline
MCI16229.1[Trifolium Alkaloid IO medium borderline
MCI23005.1[Trifolium Alkaloid IO medium borderline
MCI24403.1[Trifolium Alkaloid IO medium borderline
MCI24448.1[Trifolium Alkaloid IO medium borderline
MCI30171.1[Trifolium Alkaloid IO medium borderline
MCI33019.1[Trifolium Alkaloid IO low borderline