PlantSME Plant secondary metabolism enzyme database

Bombax ceiba (bombax_ceiba)

Imported from atlas release summary for Bombax ceiba.

2549
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.36% Phenylpropanoid pathway 21.62% Alkaloid pathway 21.22% Flavonoid pathway 12.28% Rosmarinic acid pathway 8.32% Steroid pathway 6.2%
Family Distribution
C4H 6.66% C3'H/CYP98A 6.06% BAHD 5.35% UGT 4.12% CYP76 3.96% IFS 3.8% 7DLGT 3.43% F3H 3.41%
Other Families 63.2%
More Families (96)
T3O 210 3.32% UFGT 209 3.3% POD 208 3.28% 4CL 195 3.08% DWF4/CYP90B1 170 2.68% NMT 142 2.24% CODM/T6ODM 131 2.07% BR6OX2/CYP85A2 122 1.93% F3'H/CYP75B 111 1.75% STR 104 1.64% H6H 100 1.58% CAD 96 1.52% LAC 84 1.33% CYP71 83 1.31% CAS 80 1.26% TPS 77 1.22% HCT 70 1.11% SMT1/SMT2/SMT3 70 1.11% GES 67 1.06% CSE 66 1.04% TRI/TRII 65 1.03% BBE 65 1.03% T16H 62 0.98% CYP90D1 59 0.93% F3'5'H/CYP75A 56 0.88% G8O/G8H 54 0.85% COMT 54 0.85% RAS 50 0.79% IO 49 0.77% PYKS 48 0.76% IFR 48 0.76% PAL 48 0.76% 7DLH 45 0.71% GS 44 0.69% FNS 42 0.66% F5H/CYP84A 38 0.6% TAT 35 0.55% PMT 34 0.54% NCS 34 0.54% ANR 34 0.54% CPD/CYP90A1 34 0.54% 16OMT 32 0.51% CCR 32 0.51% ANS/LDOX 30 0.47% LAMT 28 0.44% SLS 24 0.38% SGD 24 0.38% BR6OX1/CYP85A1 24 0.38% COR 23 0.36% GGPPS 23 0.36% SQE 22 0.35% DFR 19 0.3% CYP719 18 0.28% CCoAOMT 18 0.28% CYP51G1 17 0.27% FPPS 17 0.27% 8HGO 16 0.25% CHS 16 0.25% CYP80B1 15 0.24% MPO 13 0.21% TYDC_DDC 12 0.19% CPR 12 0.19% CNMT 11 0.17% HPPR 11 0.17% ROT3/CYP90C1 11 0.17% AACT 11 0.17% ODC 9 0.14% SMO1/SMO2 9 0.14% HMGR 9 0.14% TDC 8 0.13% SQS/FDFT1 8 0.13% CHI 7 0.11% DXS 7 0.11% ADC 6 0.09% HDR/IspH 6 0.09% ISY 5 0.08% MVK 5 0.08% MVD 5 0.08% HMGS 5 0.08% DET2 4 0.06% DWF7 4 0.06% HDS/IspG 4 0.06% IDI 4 0.06% MDS/IspF 4 0.06% FK 3 0.05% MCT/IspD 3 0.05% DXR 3 0.05% PMK 3 0.05% DWF1 2 0.03% GPPS 2 0.03% XMT_MXMT_DXMT 1 0.02% FLS 1 0.02% HYD1 1 0.02% CPI1 1 0.02% DWF5 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 774 21 BAHD (273) View species results
Phenylpropanoid pathway 551 11 POD (204) View species results
Alkaloid pathway 541 24 7DLGT (105) View species results
Flavonoid pathway 313 13 UFGT (186) View species results
Rosmarinic acid pathway 212 7 C4H (83) View species results
Steroid pathway 158 12 CAS (71) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2500 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HMGS
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Gene Pathway Family Confidence Status Best Target
BceiScaffold11650051200 Terpenoid HMGS high pass HMGS__00001__sp_P54873_HMCS_ARATH
BceiScaffold2200182830 Terpenoid HMGS high pass HMGS__00001__sp_P54873_HMCS_ARATH
BceiScaffold3850326280 Terpenoid HMGS high pass HMGS__00001__sp_P54873_HMCS_ARATH
BceiScaffold640443980 Terpenoid HMGS high pass HMGS__00001__sp_P54873_HMCS_ARATH
BceiScaffold890514700 Terpenoid HMGS high pass HMGS__00001__sp_P54873_HMCS_ARATH