Bombax ceiba (bombax_ceiba)
Imported from atlas release summary for Bombax ceiba.
2549
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2549
Candidate Genes
C4H
6.66%
C3'H/CYP98A
6.06%
BAHD
5.35%
UGT
4.12%
CYP76
3.96%
IFS
3.8%
7DLGT
3.43%
F3H
3.41%
Other Families
63.2%
More Families (96)
T3O
210
3.32%
UFGT
209
3.3%
POD
208
3.28%
4CL
195
3.08%
DWF4/CYP90B1
170
2.68%
NMT
142
2.24%
CODM/T6ODM
131
2.07%
BR6OX2/CYP85A2
122
1.93%
F3'H/CYP75B
111
1.75%
STR
104
1.64%
H6H
100
1.58%
CAD
96
1.52%
LAC
84
1.33%
CYP71
83
1.31%
CAS
80
1.26%
TPS
77
1.22%
HCT
70
1.11%
SMT1/SMT2/SMT3
70
1.11%
GES
67
1.06%
CSE
66
1.04%
TRI/TRII
65
1.03%
BBE
65
1.03%
T16H
62
0.98%
CYP90D1
59
0.93%
F3'5'H/CYP75A
56
0.88%
G8O/G8H
54
0.85%
COMT
54
0.85%
RAS
50
0.79%
IO
49
0.77%
PYKS
48
0.76%
IFR
48
0.76%
PAL
48
0.76%
7DLH
45
0.71%
GS
44
0.69%
FNS
42
0.66%
F5H/CYP84A
38
0.6%
TAT
35
0.55%
PMT
34
0.54%
NCS
34
0.54%
ANR
34
0.54%
CPD/CYP90A1
34
0.54%
16OMT
32
0.51%
CCR
32
0.51%
ANS/LDOX
30
0.47%
LAMT
28
0.44%
SLS
24
0.38%
SGD
24
0.38%
BR6OX1/CYP85A1
24
0.38%
COR
23
0.36%
GGPPS
23
0.36%
SQE
22
0.35%
DFR
19
0.3%
CYP719
18
0.28%
CCoAOMT
18
0.28%
CYP51G1
17
0.27%
FPPS
17
0.27%
8HGO
16
0.25%
CHS
16
0.25%
CYP80B1
15
0.24%
MPO
13
0.21%
TYDC_DDC
12
0.19%
CPR
12
0.19%
CNMT
11
0.17%
HPPR
11
0.17%
ROT3/CYP90C1
11
0.17%
AACT
11
0.17%
ODC
9
0.14%
SMO1/SMO2
9
0.14%
HMGR
9
0.14%
TDC
8
0.13%
SQS/FDFT1
8
0.13%
CHI
7
0.11%
DXS
7
0.11%
ADC
6
0.09%
HDR/IspH
6
0.09%
ISY
5
0.08%
MVK
5
0.08%
MVD
5
0.08%
HMGS
5
0.08%
DET2
4
0.06%
DWF7
4
0.06%
HDS/IspG
4
0.06%
IDI
4
0.06%
MDS/IspF
4
0.06%
FK
3
0.05%
MCT/IspD
3
0.05%
DXR
3
0.05%
PMK
3
0.05%
DWF1
2
0.03%
GPPS
2
0.03%
XMT_MXMT_DXMT
1
0.02%
FLS
1
0.02%
HYD1
1
0.02%
CPI1
1
0.02%
DWF5
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 774 | 21 | BAHD (273) | View species results |
| Phenylpropanoid pathway | 551 | 11 | POD (204) | View species results |
| Alkaloid pathway | 541 | 24 | 7DLGT (105) | View species results |
| Flavonoid pathway | 313 | 13 | UFGT (186) | View species results |
| Rosmarinic acid pathway | 212 | 7 | C4H (83) | View species results |
| Steroid pathway | 158 | 12 | CAS (71) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 2500 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 459 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| BceiScaffold100006830 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| BceiScaffold100007330 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| BceiScaffold10002610 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| BceiScaffold10003520 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| BceiScaffold10260009600 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| BceiScaffold1030010900 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| BceiScaffold1050017380 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| BceiScaffold1060020370 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| BceiScaffold110037500 | Alkaloid | NMT | medium | pass | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| BceiScaffold110038410 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| BceiScaffold1120041490 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| BceiScaffold1120041500 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| BceiScaffold1130041680 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| BceiScaffold1140043010 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| BceiScaffold1160048530 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| BceiScaffold1170054330 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| BceiScaffold1270065600 | Alkaloid | NMT | medium | borderline | NMT__00010__sp_A4GE70_DXMT1_COFCA |
| BceiScaffold1270066150 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| BceiScaffold1280070400 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| BceiScaffold1320073740 | Alkaloid | NMT | medium | borderline | NMT__00006__sp_A0A6C0WW38_CKCS_CAMSB |
| BceiScaffold1400086220 | Alkaloid | NMT | medium | borderline | NMT__00062__sp_Q9SCP7_NAMT1_ARATH |
| BceiScaffold1400086230 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| BceiScaffold1450098510 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| BceiScaffold1560110210 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| BceiScaffold15740113660 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| BceiScaffold160114960 | Alkaloid | NMT | medium | borderline | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| BceiScaffold1670121370 | Alkaloid | NMT | low | borderline | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| BceiScaffold1680128490 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| BceiScaffold1690130460 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| BceiScaffold1730135430 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| BceiScaffold1740137190 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| BceiScaffold1740139360 | Alkaloid | NMT | low | borderline | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| BceiScaffold180141770 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| BceiScaffold18400146380 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| BceiScaffold18400146400 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| BceiScaffold1890151010 | Alkaloid | NMT | medium | borderline | NMT__00052__sp_Q9AVJ9_MXMT1_COFAR |
| BceiScaffold1890152040 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| BceiScaffold19190154050 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| BceiScaffold1930154860 | Alkaloid | NMT | low | borderline | NMT__00033__sp_Q5QD03_SUVH3_CHLRE |
| BceiScaffold200162390 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| BceiScaffold2060165170 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| BceiScaffold210170150 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| BceiScaffold210170160 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| BceiScaffold210170710 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| BceiScaffold210171930 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| BceiScaffold2200181440 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| BceiScaffold2200181450 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| BceiScaffold2200184910 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| BceiScaffold2200185860 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| BceiScaffold22100190460 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |