PlantSME Plant secondary metabolism enzyme database

Bombax ceiba (bombax_ceiba)

Imported from atlas release summary for Bombax ceiba.

2549
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 774 21 BAHD (273) View species results
Phenylpropanoid pathway 551 11 POD (204) View species results
Alkaloid pathway 541 24 7DLGT (105) View species results
Flavonoid pathway 313 13 UFGT (186) View species results
Rosmarinic acid pathway 212 7 C4H (83) View species results
Steroid pathway 158 12 CAS (71) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2500 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
BceiScaffold100006870 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold100007190 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold10410015150 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold1050016150 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold110032250 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold110032260 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold110032280 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold1320074740 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold1400086240 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold1440094520 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
BceiScaffold1530106970 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold1530107000 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold1730135380 Alkaloid NCS medium pass NCS__00004__sp_Q4QTJ2_NCS1_PAPSO
BceiScaffold2200181070 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold2310207940 Alkaloid NCS medium pass NCS__00004__sp_Q4QTJ2_NCS1_PAPSO
BceiScaffold2310207950 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
BceiScaffold2430216440 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
BceiScaffold2430216450 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
BceiScaffold25000232850 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold2530234280 Alkaloid NCS medium pass NCS__00005__sp_Q67A25_NCS_THLFG
BceiScaffold2580238150 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold3240296750 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold340302800 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold3850326490 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold3850327060 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold4120354200 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold520409040 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold570422360 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold640446500 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold660459520 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold730475690 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold740483210 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold890516120 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
BceiScaffold890517180 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA