Bombax ceiba (bombax_ceiba)
Imported from atlas release summary for Bombax ceiba.
2549
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2549
Candidate Genes
C4H
6.66%
C3'H/CYP98A
6.06%
BAHD
5.35%
UGT
4.12%
CYP76
3.96%
IFS
3.8%
7DLGT
3.43%
F3H
3.41%
Other Families
63.2%
More Families (96)
T3O
210
3.32%
UFGT
209
3.3%
POD
208
3.28%
4CL
195
3.08%
DWF4/CYP90B1
170
2.68%
NMT
142
2.24%
CODM/T6ODM
131
2.07%
BR6OX2/CYP85A2
122
1.93%
F3'H/CYP75B
111
1.75%
STR
104
1.64%
H6H
100
1.58%
CAD
96
1.52%
LAC
84
1.33%
CYP71
83
1.31%
CAS
80
1.26%
TPS
77
1.22%
HCT
70
1.11%
SMT1/SMT2/SMT3
70
1.11%
GES
67
1.06%
CSE
66
1.04%
TRI/TRII
65
1.03%
BBE
65
1.03%
T16H
62
0.98%
CYP90D1
59
0.93%
F3'5'H/CYP75A
56
0.88%
G8O/G8H
54
0.85%
COMT
54
0.85%
RAS
50
0.79%
IO
49
0.77%
PYKS
48
0.76%
IFR
48
0.76%
PAL
48
0.76%
7DLH
45
0.71%
GS
44
0.69%
FNS
42
0.66%
F5H/CYP84A
38
0.6%
TAT
35
0.55%
PMT
34
0.54%
NCS
34
0.54%
ANR
34
0.54%
CPD/CYP90A1
34
0.54%
16OMT
32
0.51%
CCR
32
0.51%
ANS/LDOX
30
0.47%
LAMT
28
0.44%
SLS
24
0.38%
SGD
24
0.38%
BR6OX1/CYP85A1
24
0.38%
COR
23
0.36%
GGPPS
23
0.36%
SQE
22
0.35%
DFR
19
0.3%
CYP719
18
0.28%
CCoAOMT
18
0.28%
CYP51G1
17
0.27%
FPPS
17
0.27%
8HGO
16
0.25%
CHS
16
0.25%
CYP80B1
15
0.24%
MPO
13
0.21%
TYDC_DDC
12
0.19%
CPR
12
0.19%
CNMT
11
0.17%
HPPR
11
0.17%
ROT3/CYP90C1
11
0.17%
AACT
11
0.17%
ODC
9
0.14%
SMO1/SMO2
9
0.14%
HMGR
9
0.14%
TDC
8
0.13%
SQS/FDFT1
8
0.13%
CHI
7
0.11%
DXS
7
0.11%
ADC
6
0.09%
HDR/IspH
6
0.09%
ISY
5
0.08%
MVK
5
0.08%
MVD
5
0.08%
HMGS
5
0.08%
DET2
4
0.06%
DWF7
4
0.06%
HDS/IspG
4
0.06%
IDI
4
0.06%
MDS/IspF
4
0.06%
FK
3
0.05%
MCT/IspD
3
0.05%
DXR
3
0.05%
PMK
3
0.05%
DWF1
2
0.03%
GPPS
2
0.03%
XMT_MXMT_DXMT
1
0.02%
FLS
1
0.02%
HYD1
1
0.02%
CPI1
1
0.02%
DWF5
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 774 | 21 | BAHD (273) | View species results |
| Phenylpropanoid pathway | 551 | 11 | POD (204) | View species results |
| Alkaloid pathway | 541 | 24 | 7DLGT (105) | View species results |
| Flavonoid pathway | 313 | 13 | UFGT (186) | View species results |
| Rosmarinic acid pathway | 212 | 7 | C4H (83) | View species results |
| Steroid pathway | 158 | 12 | CAS (71) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 2500 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 459 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| BceiScaffold2210188590 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| BceiScaffold2290201880 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| BceiScaffold23510209690 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| BceiScaffold23510209700 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| BceiScaffold240212460 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| BceiScaffold240213580 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| BceiScaffold2410214810 | Alkaloid | NMT | low | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| BceiScaffold2450217490 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| BceiScaffold2460220310 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| BceiScaffold24780222250 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| BceiScaffold2490223080 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| BceiScaffold250228320 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| BceiScaffold2580243060 | Alkaloid | NMT | medium | pass | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| BceiScaffold2580246870 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| BceiScaffold2630253510 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| BceiScaffold2630253520 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| BceiScaffold26580254980 | Alkaloid | NMT | medium | pass | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| BceiScaffold2670255680 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| BceiScaffold30277960 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| BceiScaffold30283790 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| BceiScaffold3240294920 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| BceiScaffold3280298540 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| BceiScaffold3280298560 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| BceiScaffold3280298570 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| BceiScaffold3280298580 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| BceiScaffold340302710 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| BceiScaffold360310930 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| BceiScaffold3640314810 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| BceiScaffold3640317570 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| BceiScaffold380323260 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| BceiScaffold380323480 | Alkaloid | NMT | medium | pass | NMT__00019__sp_O22781_SUVH2_ARATH |
| BceiScaffold3820324700 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| BceiScaffold40332480 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| BceiScaffold40339040 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| BceiScaffold40339600 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| BceiScaffold410349810 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| BceiScaffold4140355850 | Alkaloid | NMT | medium | borderline | NMT__00020__sp_O23372_ATXR3_ARATH |
| BceiScaffold4140355860 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| BceiScaffold4140355870 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| BceiScaffold4140355880 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| BceiScaffold4140355890 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| BceiScaffold4150356150 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| BceiScaffold4150356310 | Alkaloid | NMT | medium | pass | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| BceiScaffold4150356360 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| BceiScaffold430363810 | Alkaloid | NMT | low | borderline | NMT__00021__sp_O64827_SUVR5_ARATH |
| BceiScaffold430363820 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| BceiScaffold430363830 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| BceiScaffold430364200 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| BceiScaffold4350366370 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| BceiScaffold4520372410 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |